View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6971_low_29 (Length: 204)
Name: NF6971_low_29
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6971_low_29 |
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| [»] chr7 (5 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 7916059 - 7916183
Alignment:
| Q |
79 |
ctcaatatcagcattgtctcatcaaagattgaattgagacataatatgatacaattatcttatcatgacgacctggcggatcctaaaatatttttctaac |
178 |
Q |
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| T |
7916059 |
ctcaatatcagcattatctcatcaaacattgaattgagacataatatgatacaaatatcttatcatgacga-ctggtggatcctaaaatatttttctaac |
7916157 |
T |
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| Q |
179 |
ctgtttggtggtgatgataagatata |
204 |
Q |
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| T |
7916158 |
ctgtttggtggcgatgataagatata |
7916183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 8408915 - 8408853
Alignment:
| Q |
79 |
ctcaatatcagcattgtctcatcaaagattgaattgagacataatatgatacaattatcttat |
141 |
Q |
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| T |
8408915 |
ctcaatatctgtattgtctcatcaaacattgaattgagacatgatatgatacaattatgttat |
8408853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 8437800 - 8437730
Alignment:
| Q |
81 |
caatatcagcattgtctcatcaaagattgaattgagacataatatgatacaattatcttatcatgacgacc |
151 |
Q |
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| T |
8437800 |
caatatcggtattgtctcattaaacattgaattgagacatgatatgatacaattatcttattatggcgacc |
8437730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 8414226 - 8414172
Alignment:
| Q |
95 |
tctcatcaaagattgaattgagacataatatgatacaattatcttatcatgacga |
149 |
Q |
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| T |
8414226 |
tctcatcaaatattaaattgagacataatatgatataattatcttattatgacga |
8414172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 8428272 - 8428338
Alignment:
| Q |
79 |
ctcaatatcagcattgtctcatcaaagattgaattgagacataatatgatacaattatcttatcatg |
145 |
Q |
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| T |
8428272 |
ctcaatatcaatattgtctcatcaaacattgaattgaaacataatatgatacatttagattatcatg |
8428338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 73166 - 73227
Alignment:
| Q |
80 |
tcaatatcagcattgtctcatcaaagattgaattgagacataatatgatacaattatcttat |
141 |
Q |
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| T |
73166 |
tcaatatcagtattttctcattaaatattgaattgagacatgatatgatacaattatcttat |
73227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 35978397 - 35978447
Alignment:
| Q |
92 |
ttgtctcatcaaagattgaattgagacataatatgatacaattatcttatc |
142 |
Q |
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| T |
35978397 |
ttgtctcatcgaacaatgaattgagacatgatatgatacaattatcatatc |
35978447 |
T |
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