View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6971_low_4 (Length: 403)
Name: NF6971_low_4
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6971_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 20410663 - 20411029
Alignment:
| Q |
18 |
aggacattcacttgatagattccattgcagaaaaacaggcacaaatattttctgaagaatgtaaattgtttcccgcagatgttcagattcagtccatata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20410663 |
aggacattcacttgatagattccattgcagaaaaacaggcacaaatattttctgaagaatgtaaattgtttcccgcagatgttcagattcagtccatata |
20410762 |
T |
|
| Q |
118 |
tcccttgtaagagtttgatgctttccctttcttctgcttatgaatttttacctatccattctgtgatttctattagaggaacacatttttatttcattaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20410763 |
tcccttgtaagagtttgatgctttccctttcttctgcttatgaatttttacctatccattctgtgatttctattagaggaacacatttttatttcattaa |
20410862 |
T |
|
| Q |
218 |
gttaccactgtaccatctgatatagggtctagcatgggtatcactttagtgcttcagtaagggtctgccaaacatcttgtagaatgacataatgtacttc |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20410863 |
gttaccactgtatcatctgatatagggtctagcatgggtatcactttagtgcttcagtaagggtctgccaaacatcttgtagaatgacataatgtacttc |
20410962 |
T |
|
| Q |
318 |
atcttccacctctggatcaccttgactgatcatcatactgtttttgattgatcattacatcttttct |
384 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
20410963 |
atcttccacctctggatcaccttgactgatcatcatactgtttttgattgatcattacgtcatttct |
20411029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 17843407 - 17843772
Alignment:
| Q |
18 |
aggacattcacttgatagattccattgcagaaaaacaggcacaaatattttctgaagaatgtaaattgtttcccgcagatgttcagattcagtccatata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17843407 |
aggacattcacttgatagattccattgcagaaaaacaggcacaaatattttctgaagaatgtaaattgtttcccgcagatgttcagattcagtccatata |
17843506 |
T |
|
| Q |
118 |
tcccttgtaagagtttgatgctttccctttcttctgcttatgaatttttacctatccattctgtgatttctattagaggaacacatttttatttcattaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17843507 |
tcccttgtaagagtttgatgctttccctttcttctgcttatgaatttctacctatccattctgtgatttctatta-aggaacacatttttatttcattaa |
17843605 |
T |
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| Q |
218 |
gttaccactgtaccatctgatatagggtctagcatgggtatcactttagtgcttcagtaagggtctgccaaacatcttgtagaatgacataatgtacttc |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17843606 |
tttaccactgtaccatctgatatagggtctagcatgggtatcactttagtgcttcaataagggtctgccaaacatctagtagaatgacataatgtacttc |
17843705 |
T |
|
| Q |
318 |
atcttccacctctggatcaccttgactgatcatcatactgtttttgattgatcattacatcttttct |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |
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|
| T |
17843706 |
atcttccacctctggatcaccttgactgatcatcatactgtttttgattgatctttacgtcatttct |
17843772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 5307891 - 5308256
Alignment:
| Q |
18 |
aggacattcacttgatagattccattgcagaaaaacaggcacaaatattttctgaagaatgtaaattgtttcccgcagatgttcagattcagtccatata |
117 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5307891 |
aggacatacacttgatagattctattgcagaaaaacaggcacaaatattttctgaagaatgtaaattgtttcccgcagatgttcagattcagtccatata |
5307990 |
T |
|
| Q |
118 |
tcccttgtaagagtttgatgctttccctttcttctgcttatgaatttttacctatccattctgtgatttctattagaggaacacatttttatttcattaa |
217 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
5307991 |
tcccttgtaagagtttgtt-ctttccctttcttctgcttatgaatttttacctatccattctgtgaattgtattagaggaacacatttttatttcattaa |
5308089 |
T |
|
| Q |
218 |
gttaccactgtaccatctgatatagggtctagcatgggtatcactttagtgcttcagtaagggtctgccaaacatcttgtagaatgacataatgtacttc |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5308090 |
gttaccactgtaccatctgatagagggtgtagcatgggtatcactttagtgcttcaataagggtctgccaaacatcttgtagaatgacataatgtacttc |
5308189 |
T |
|
| Q |
318 |
atcttccacctctggatcaccttgactgatcatcatactgtttttgattgatcattacatcttttct |
384 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
5308190 |
atcttccacctctggatcaccgtgactgatcatcatactgtttttgattgatcattacgtcatttct |
5308256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 32559095 - 32558901
Alignment:
| Q |
18 |
aggacattcacttgatagattccattgcagaaaaacaggcacaaatattttctgaagaatgtaaattgtttcccgcagatgttcagattcagtccatata |
117 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||| ||||| |
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| T |
32559095 |
aggacatccaattgatagattccattgcagaaaaacaggcacaaatattttcggaagactataaattgtttcctgcagatgttcagattcagtcaatata |
32558996 |
T |
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| Q |
118 |
tcccttgtaagagtttgatgctttccctttcttctgcttatgaatttttacctatccattctgtgatttctattagaggaacacatttttatttcatta |
216 |
Q |
| |
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||| |||||| ||||| ||||| |||| || | | |||||||||||| | | || | ||||||||||| |||||||||| || || ||||||||| |
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| T |
32558995 |
tccattgtaaaagtttcttgctt---cttt-ttattatcatgaatttttactttttcaatttgtgatttctagtagaggaacatatcttcatttcatta |
32558901 |
T |
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