View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6971_low_5 (Length: 396)
Name: NF6971_low_5
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6971_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 3 - 396
Target Start/End: Original strand, 19460460 - 19460853
Alignment:
| Q |
3 |
aggtaggattgtaggaattttctctactggtatgttgagatctctcaccacccgctgagaaataaagttgtgggttgctcctctagtccactgtcaatta |
102 |
Q |
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| T |
19460460 |
aggtaggattgtaggaattttctctactggtatgttgagatctctcaccacccgctgagaaataaagttgtgggttgctccactagtccactgtcaatta |
19460559 |
T |
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| Q |
103 |
ggattgtcaccacacttttcagaaaagtaccccaagtttgagttctctctccggagtaagccctaccatgctttgaatgtctaacttcaccattctctca |
202 |
Q |
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| T |
19460560 |
ggattgtcaccacacttttcagaaaagtaccccaagtttgagttctctctccggagtaagccctaccatgctttgaatgtctaacttcaccattctctca |
19460659 |
T |
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| Q |
203 |
ttcaaagaaccctcgagtccatttttctctagctccccccttctactccctctaattccttcacaatcatcaccttgaaatgttgttttacaaacatgcg |
302 |
Q |
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| T |
19460660 |
ttcaaagaaccctcgagtccatttttctctagctccccccttctactccctctaattccttcacaatcatcaccttgaaatgctgttttacaaacatgtg |
19460759 |
T |
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| Q |
303 |
tcgatgtgaattttttattacaagtgaagtagagttcctccttctctcccaatattctccttccgaaatagatcaaatcctcttccccttgttc |
396 |
Q |
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| T |
19460760 |
tcgatgtgaattttttattacaagtgaagtagagttcctccttctcttccaatattctccttctgaaatagatcaaatcctcttccccttgttc |
19460853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 10193115 - 10192773
Alignment:
| Q |
14 |
taggaattttctctactggtatgttgagatctctcaccacccgctgagaaataa----agttgtgggtt-gctcctctagtccactgtcaattaggattg |
108 |
Q |
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| T |
10193115 |
taggaatgtactctactggtatgctgagatctctgaccaattgctgagaaataattaaagttgtgggtttgcttcactattccactggtaattaggattg |
10193016 |
T |
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| Q |
109 |
tcaccacacttttcagaaaagtaccccaa-gtttgagttctctctccggagtaagccctaccatgctttgaatgtctaacttcaccattctctcattcaa |
207 |
Q |
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| T |
10193015 |
tcaccgcacttttcagaaaagtaccccaaagtttgagtgccctcttcggagtaagccctactatgctttgaatggccaacttcaccattttctcattcaa |
10192916 |
T |
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| Q |
208 |
agaaccctcgagtc---catttttctctagct-ccccccttctactccctctaa---ttccttcacaatcatcaccttgaaatgttgttttacaaacatg |
300 |
Q |
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| T |
10192915 |
agaa--ctcaactccttcattttgctctagctcccccccttctactccctcgaattcttccttcacaatcatcaccatgaaa---tgttttacaaacatg |
10192821 |
T |
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| Q |
301 |
cgtcgatgtgaa-ttttttattacaagtgaagtagagttcctccttct |
347 |
Q |
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| T |
10192820 |
tgaaggtgtgaatttttttatcacaagtgaagcagagttcctccttct |
10192773 |
T |
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