View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6971_low_6 (Length: 364)

Name: NF6971_low_6
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6971_low_6
NF6971_low_6
[»] chr1 (2 HSPs)
chr1 (1-364)||(45873878-45874241)
chr1 (95-189)||(34644888-34644982)
[»] chr4 (4 HSPs)
chr4 (64-189)||(3330241-3330366)
chr4 (66-192)||(34952464-34952590)
chr4 (92-185)||(132705-132797)
chr4 (93-177)||(50000628-50000712)
[»] chr8 (2 HSPs)
chr8 (93-189)||(39434987-39435083)
chr8 (115-189)||(24125370-24125444)
[»] chr3 (2 HSPs)
chr3 (95-189)||(45676477-45676571)
chr3 (77-165)||(43123448-43123536)
[»] chr2 (1 HSPs)
chr2 (115-189)||(41867599-41867673)
[»] chr5 (1 HSPs)
chr5 (66-178)||(38446459-38446571)
[»] chr6 (1 HSPs)
chr6 (66-141)||(12401624-12401699)


Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 45873878 - 45874241
Alignment:
Q  1 tcataacatatgctgacctaagtgtcgatcttccaacaaggagataaaataagaagcttacaagtgcctcattcttcacaaatactttcgtccgcctgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  45873878 tcataacatatgctgacctaagtgtcgatcttccaacaaggagataaaataagaagcttacaggtgcctcattcttcacaaatactttcgtccgcctgta 45873977  T
Q  101 tatataaaaagtggcatctctaacaaagtcaagcttgtatttaaaatcgggaagctctttacaattaatggcatgctctccaaaggtattcaagtacatc 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45873978 tatataaaaagtggcatctctaataaagtcaagcttgtatttaaaattaggaaactctttacaattaatggcatgctctccaaaggtattcaagtacatc 45874077  T
Q  201 ttaacgctaatacaatacacttcattaatagaaaacaatgaaatcatgaagcgatattagagaatataaacgtttctgtggcttatttttgtcaccattt 300  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||  ||||||||||||| | ||||||||||||||||||||||||    
T  45874078 ttaacgctaatacaatacccttcattaataaaaaacaatgaaatcatgaagcgatattgaagaatataaacgtatatgtggcttatttttgtcaccattt 45874177  T
Q  301 gagatggtctaaagggagtatctaatctaatattaaacattgagtgtttcaccttagttagtac 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45874178 gagatggtctaaagggagtatctaatctaatattaaacattgagtgttccaccttagttagtac 45874241  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 34644888 - 34644982
Alignment:
Q  95 cctgaatatat-aaaaagtggcatctctaacaaagtcaagcttgtatttaaaatcgggaagctctttacaattaatggcatgctctccaaaggtat 189  Q
    ||||||||||| |||||||  |||| |||| ||||||| || |||| ||||| ||||||||||||||||||| || | ||||||| ||||| ||||    
T  34644888 cctgaatatatcaaaaagta-catccctaataaagtcatgcctgtacttaaagtcgggaagctctttacaatgaacgacatgctcgccaaaagtat 34644982  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 3330241 - 3330366
Alignment:
Q  64 gtgcctcattcttcacaaatactttcgtccgcctgaatatat-aaaaagtggcatctctaacaaagtcaagcttgtatttaaaatcgggaagctctttac 162  Q
    ||||||| ||||||||  |||||  ||  ||||||||||||| |||||||  |||| |||||||||||| || |||| |||||  |||||||||| ||||    
T  3330241 gtgcctccttcttcactgatactcccgctcgcctgaatatatcaaaaagta-catccctaacaaagtcatgcctgtacttaaagccgggaagctccttac 3330339  T
Q  163 aattaatggcatgctctccaaaggtat 189  Q
    ||| |||||||||||| ||||| ||||    
T  3330340 aatgaatggcatgctccccaaaagtat 3330366  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 34952464 - 34952590
Alignment:
Q  66 gcctcattcttcacaaatactttcgtccgcctgaatatataaaaagtggcatctctaacaaagtcaagcttgtatttaaaatcgggaagctctttacaat 165  Q
    ||||| ||||||||  ||||| ||| |||||| ||||||| |||| || |||| |||||||||||| |  |||| ||||| | | ||||||| ||||| |    
T  34952464 gcctccttcttcactgatactctcgcccgccttaatatatcaaaaatgacatccctaacaaagtcatgtatgtacttaaagtagagaagctccttacatt 34952563  T
Q  166 taatggcatgctctccaaaggtattca 192  Q
     || ||||||||| ||||| |||||||    
T  34952564 aaacggcatgctccccaaaagtattca 34952590  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 132705 - 132797
Alignment:
Q  92 ccgcctgaatatataaaaagtggcatctctaacaaagtcaagcttgtatttaaaatcgggaagctctttacaattaatggcatgctctccaaag 185  Q
    |||||||||||||| ||||||  |||| |||||||||||| | || || |||||| ||| |||||| ||||||| || | ||||||||||||||    
T  132705 ccgcctgaatatatcaaaagta-catccctaacaaagtcatgattatacttaaaaccggaaagctccttacaatgaacgacatgctctccaaag 132797  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 50000712 - 50000628
Alignment:
Q  93 cgcctgaatatat-aaaaagtggcatctctaacaaagtcaagcttgtatttaaaatcgggaagctctttacaattaatggcatgct 177  Q
    ||||||||||||| |||||||  ||||  ||||||||||| |  |||||||||| ||||||||||| ||||||| || ||||||||    
T  50000712 cgcctgaatatatcaaaaagta-catccttaacaaagtcatgtctgtatttaaagtcgggaagctccttacaatgaacggcatgct 50000628  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 39434987 - 39435083
Alignment:
Q  93 cgcctgaatatat-aaaaagtggcatctctaacaaagtcaagcttgtatttaaaatcgggaagctctttacaattaatggcatgctctccaaaggtat 189  Q
    ||||||||||||| |||||||  |||| |||||||||||| || |||| |||||  ||||||| |||||||||| || ||||||||| ||||| ||||    
T  39434987 cgcctgaatatatcaaaaagta-catccctaacaaagtcatgcctgtacttaaagccgggaagttctttacaatgaacggcatgctccccaaaagtat 39435083  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 24125370 - 24125444
Alignment:
Q  115 catctctaacaaagtcaagcttgtatttaaaatcgggaagctctttacaattaatggcatgctctccaaaggtat 189  Q
    |||| |||||||||||| | ||||| ||||| ||||||||||| ||| ||| || ||||||||| ||||| ||||    
T  24125370 catccctaacaaagtcatgtttgtacttaaagtcgggaagctccttaaaatgaacggcatgctccccaaaagtat 24125444  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 45676571 - 45676477
Alignment:
Q  95 cctgaatatataaaaagtggcatctctaacaaagtcaagcttgtatttaaaatcgggaagctctttacaattaatggcatgctctccaaaggtat 189  Q
    ||||||||||| ||||  | ||||  ||||||||||| || ||||||| || ||||||||||  ||||||| ||| |||| ||||||||| ||||    
T  45676571 cctgaatatatcaaaaaggacatccataacaaagtcatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtat 45676477  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 43123448 - 43123536
Alignment:
Q  77 cacaaatactttcgtccgcctgaatatataaaaagtggcatctctaacaaagtcaagcttgtatttaaaatcgggaagctctttacaat 165  Q
    |||| ||||| |||||| ||| ||||||||||||  | |||| |||||||||||| || ||||||| |||| || |||||  |||||||    
T  43123448 cacagatactctcgtccacctaaatatataaaaaaggacatccctaacaaagtcatgcatgtatttgaaattggaaagcttcttacaat 43123536  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 41867673 - 41867599
Alignment:
Q  115 catctctaacaaagtcaagcttgtatttaaaatcgggaagctctttacaattaatggcatgctctccaaaggtat 189  Q
    |||| |||||||||||| |  |||| |||||  |||||||||| ||||||| |||||||||||| ||||| ||||    
T  41867673 catccctaacaaagtcacgtctgtacttaaagccgggaagctccttacaatgaatggcatgctccccaaaagtat 41867599  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 38446459 - 38446571
Alignment:
Q  66 gcctcattcttcacaaatactttcgtccgcctgaatatat-aaaaagtggcatctctaacaaagtcaagcttgtatttaaaatcgggaagctctttacaa 164  Q
    ||||| ||||||||  |||||  || |||||||||||||| |||||||  |||| |||||||||||| || |||| ||||| | ||||||||| ||||||    
T  38446459 gcctccttcttcactgatactcccgcccgcctgaatatatcaaaaagta-catccctaacaaagtcatgcatgtacttaaagttgggaagctccttacaa 38446557  T
Q  165 ttaatggcatgctc 178  Q
    | || |||| ||||    
T  38446558 tgaacggcacgctc 38446571  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 12401624 - 12401699
Alignment:
Q  66 gcctcattcttcacaaatactttcgtccgcctgaatatat-aaaaagtggcatctctaacaaagtcaagcttgtatt 141  Q
    ||||| |||||||| |||||| ||| |||||||||||||| |||||||  ||| ||||||||||||| | |||||||    
T  12401624 gcctccttcttcactaatactctcgcccgcctgaatatatcaaaaagt-acatttctaacaaagtcatgtttgtatt 12401699  T

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