View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6971_low_8 (Length: 327)

Name: NF6971_low_8
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6971_low_8
NF6971_low_8
[»] chr3 (2 HSPs)
chr3 (1-310)||(33130408-33130717)
chr3 (4-38)||(54670806-54670840)
[»] chr2 (2 HSPs)
chr2 (1-90)||(15480279-15480368)
chr2 (165-262)||(606187-606284)
[»] chr7 (5 HSPs)
chr7 (211-252)||(3615277-3615318)
chr7 (1-38)||(5568559-5568596)
chr7 (208-251)||(5568467-5568510)
chr7 (1-38)||(3615177-3615214)
chr7 (2-38)||(35611334-35611370)
[»] chr4 (3 HSPs)
chr4 (1-38)||(9981339-9981376)
chr4 (208-251)||(9981247-9981290)
chr4 (4-37)||(20855602-20855635)
[»] scaffold1903 (2 HSPs)
scaffold1903 (208-252)||(340-384)
scaffold1903 (2-38)||(444-480)
[»] chr8 (1 HSPs)
chr8 (4-38)||(14735406-14735440)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 33130408 - 33130717
Alignment:
Q  1 ctatttgtttcaagaggagattagaggaagaaacacaacaaagttttgttccggcgaagcgtgttgcggtggattctaaggctgtgagttggggaaatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33130408 ctatttgtttcaagaggagattagaggaagaaacacaacaaagttttgttccggcgaagcgtgttgcggtggattctaaggctgtgagttggggaaatca 33130507  T
Q  101 acctttgagtgtagctgatcctgaaatatttacaattatggagaaggaaaagttgagacagtttaaaggaattgaattaattgcttctgagaattttgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33130508 acctttgagtgtagctgatcctgaaatatttacaattatggagaaggaaaagttgagacagtttaaaggaattgaattaattgcttctgagaattttgtt 33130607  T
Q  201 tgcagggctgtgatggaagcacttggtagtcatttgactaataagtattcagagggaatgccgggagctaaatattatacgggtaatcagtatatcgacc 300  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |    
T  33130608 tgtagggctgtgatggaagcacttggtagtcatttgactaataagtattcagagggaatgccgggagcgaaatattataccggtaatcagtatatcgatc 33130707  T
Q  301 agcttgagtt 310  Q
    ||||||||||    
T  33130708 agcttgagtt 33130717  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 54670840 - 54670806
Alignment:
Q  4 tttgtttcaagaggagattagaggaagaaacacaa 38  Q
    ||||||||| |||||||||||||||||||||||||    
T  54670840 tttgtttcacgaggagattagaggaagaaacacaa 54670806  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 15480368 - 15480279
Alignment:
Q  1 ctatttgtttcaagaggagattagaggaagaaacacaacaaagttttgttccggcgaagcgtgttgcggtggattctaaggctgtgagtt 90  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||| ||||||||    
T  15480368 ctatttgtttcaagaggagattggaggaagaaacacaacgaagttttgttccagcgaagcgtgtcgcggtggattctaaggttgtgagtt 15480279  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 606187 - 606284
Alignment:
Q  165 aaaggaattgaattaattgcttctgagaattttgtttgcagggctgtgatggaagcacttggtagtcatttgactaataagtattcagagggaatgcc 262  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| || ||||| || ||||| || || || ||||||||    
T  606187 aaagggattgaattgatagcttctgagaattttgtttgcagggctgtaatggaagcgcttggaagccatttaacgaataaatactctgaaggaatgcc 606284  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 3615277 - 3615318
Alignment:
Q  211 tgatggaagcacttggtagtcatttgactaataagtattcag 252  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  3615277 tgatggaagcactttgtagtcatttgactaataagtattcag 3615318  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5568596 - 5568559
Alignment:
Q  1 ctatttgtttcaagaggagattagaggaagaaacacaa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5568596 ctatttgtttcaagaggagattagaggaagaaacacaa 5568559  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 5568510 - 5568467
Alignment:
Q  208 ctgtgatggaagcacttggtagtcatttgactaataagtattca 251  Q
    ||||||||||||||||| |||||||||||||||| |||||||||    
T  5568510 ctgtgatggaagcactttgtagtcatttgactaacaagtattca 5568467  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3615177 - 3615214
Alignment:
Q  1 ctatttgtttcaagaggagattagaggaagaaacacaa 38  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  3615177 ctatttgtttcaagaggagatcagaggaagaaacacaa 3615214  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 35611370 - 35611334
Alignment:
Q  2 tatttgtttcaagaggagattagaggaagaaacacaa 38  Q
    ||||||||||| |||||||||||||||||||||||||    
T  35611370 tatttgtttcatgaggagattagaggaagaaacacaa 35611334  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9981376 - 9981339
Alignment:
Q  1 ctatttgtttcaagaggagattagaggaagaaacacaa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9981376 ctatttgtttcaagaggagattagaggaagaaacacaa 9981339  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 9981290 - 9981247
Alignment:
Q  208 ctgtgatggaagcacttggtagtcatttgactaataagtattca 251  Q
    ||||||||||||||||| |||||||||||||||| |||||||||    
T  9981290 ctgtgatggaagcactttgtagtcatttgactaacaagtattca 9981247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 20855602 - 20855635
Alignment:
Q  4 tttgtttcaagaggagattagaggaagaaacaca 37  Q
    ||||||||| ||||||||||||||||||||||||    
T  20855602 tttgtttcacgaggagattagaggaagaaacaca 20855635  T

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Target: scaffold1903 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 384 - 340
Alignment:
Q  208 ctgtgatggaagcacttggtagtcatttgactaataagtattcag 252  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||    
T  384 ctgtgatggaagcactttgtagtcatttgactaacaagtattcag 340  T

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Target: scaffold1903; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 480 - 444
Alignment:
Q  2 tatttgtttcaagaggagattagaggaagaaacacaa 38  Q
    |||||||||||||||||||||||||||||||||||||    
T  480 tatttgtttcaagaggagattagaggaagaaacacaa 444  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 14735406 - 14735440
Alignment:
Q  4 tttgtttcaagaggagattagaggaagaaacacaa 38  Q
    ||||||||| |||||||||||||||||||||||||    
T  14735406 tttgtttcacgaggagattagaggaagaaacacaa 14735440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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