View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6971_low_9 (Length: 308)
Name: NF6971_low_9
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6971_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 123 - 308
Target Start/End: Complemental strand, 17202844 - 17202659
Alignment:
| Q |
123 |
atctaagttatcaattaaaaacttagttaacttttcaataaaataagaacaattcacaacagggatgaaatcacacataatgaagaatattctttcaagt |
222 |
Q |
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| T |
17202844 |
atctaagttatcaattaaaaagtcagttaaattttcaataaaataagagcaattcacaacagggatgaaatcacacataatgaagaatattcttttaagt |
17202745 |
T |
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| Q |
223 |
atgaggcaacttctggctaggctataagtcttccaaagtctaaannnnnnnatatccaaaatgttgatactaatttgcagaataat |
308 |
Q |
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| T |
17202744 |
atgaggcagcttctggctaggctataagtcttccaaagtctaaatttttttatatccaaaatgttgatactaatttgcagaataat |
17202659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17202961 - 17202901
Alignment:
| Q |
1 |
tgtttgttcgtttatttacttctataatgatatataaagatgatacactcttttatgttaga |
62 |
Q |
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| T |
17202961 |
tgtttgttcgtttatttacttctataatgatatataaagatgatacact-ttttatgttaga |
17202901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 35390490 - 35390538
Alignment:
| Q |
126 |
taagttatcaattaaaaacttagttaacttttcaataaaataagaacaat |
175 |
Q |
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| T |
35390490 |
taagttatcaattaaaaaattagttaa-gtttcattaaaataagaacaat |
35390538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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