View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6972_high_1 (Length: 649)

Name: NF6972_high_1
Description: NF6972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6972_high_1
NF6972_high_1
[»] chr5 (1 HSPs)
chr5 (1-633)||(14544725-14545353)


Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Complemental strand, 14545353 - 14544725
Alignment:
Q  1 acaaaccagaagcagttggaagtgaagcagcagcagcaccaccaccagtgcagagatgactgagttgagtttcgatcttgttcagaaacgttttagcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14545353 acaaaccagaagcagttggaagtgaagcagcagcagcaccacca---gtgcagagatgactgagttgagtttcgatcttgttcagaaacgttgtagcttc 14545257  T
Q  101 gtcaaaaggtcgagtaaggtctgatttatacttcacaagcatgtcacaataactttcctgaaacaaccataatcaacatcaataaagttgcatttaattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14545256 gtcaaaaggtcgagtaaggtctgatttatacttcacaagcatgtcacaataactttcctgaaacaaccataatcaacatcaataaagttgcatttaattt 14545157  T
Q  201 atttattttcaataaaatnnnnnnn-taaatatatttttgtgttcgtgcgagcgaaacaaagaaagaaagaaaggatttaagggggg-accataaattca 298  Q
    ||||||||||||||||||        || | |||||||||||||||||| ||||||||||||||||||||    ||||||||||||| ||||||||||||    
T  14545156 atttattttcaataaaataaaaaaaatataaatatttttgtgttcgtgcaagcgaaacaaagaaagaaag----gatttaagggggggaccataaattca 14545061  T
Q  299 tcaagctcgggatcggctccaaaacacgtggaaacaacaacgtctcttttacacatatcgttttctcttcgaatctcttccaataaacttgcaatttcag 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14545060 tcaagctcgggatcggctccaaaacacgtggaaacaacaacgtctcttttacacatatcgttttctcttcgaatctcctccaataaacttgcaatttcag 14544961  T
Q  399 gaggagcaccaacctaaacaatttattagcaattgcagaaattcgttaaactagattaagaccgtcacgttgcagagtagttacgatcaaacttagttta 498  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  14544960 gaggagcaccaacctaaacaatttattagcaattatagaaattcgttaaactggattaagaccgtcacgttgcagagtagttacgatcagacttagttta 14544861  T
Q  499 a-tttaccttttgacaatcgatataggcttgaagaaggcgaggataataaggatgagaagcaattttagctttcatgatattagatgccacgtcatcttg 597  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14544860 attttaccttttgacaatcgatataggcttgaagaaggcgagggtaataaggatgagaagcaattttagctttcatgatattagatgccacgtcatcttg 14544761  T
Q  598 aattccggcggaagaaggttccgccgccgtgaagat 633  Q
    ||||||||||||||||||||||||||||||||||||    
T  14544760 aattccggcggaagaaggttccgccgccgtgaagat 14544725  T

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