View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6972_high_3 (Length: 428)
Name: NF6972_high_3
Description: NF6972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6972_high_3 |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 255 - 413
Target Start/End: Complemental strand, 22391687 - 22391529
Alignment:
| Q |
255 |
aaaaattgacaacagaaaaatgaaagcagaatgaaccgagtacattgactaactggtgtaaaataaaaatttgttttatgcatgtcctcggagacttctc |
354 |
Q |
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| T |
22391687 |
aaaaattgacaacagaaaaatgaaagcagaatgaaccgagtacatggactaactggtgtaaaataaaaatttgttttatgtatgtcctcggagacttctc |
22391588 |
T |
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| Q |
355 |
tgtcaaataaataggagttttgggtattataaaaggtttgttgaaatatggacttgatg |
413 |
Q |
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| T |
22391587 |
tgtcaaataaatagaagatttgggtattataaaaggtttgttgaaatatggacttgatg |
22391529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 22391768 - 22391702
Alignment:
| Q |
31 |
atgtgcttgattttaattgttaacaat-attgtcctctgaacaattgtaatttcgtagtatattagt |
96 |
Q |
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| T |
22391768 |
atgtgcttgattttaattgtttacaatcattgtcctttgaacaattgtaatttcatactatattagt |
22391702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 86 - 248
Target Start/End: Complemental strand, 80191 - 80035
Alignment:
| Q |
86 |
agtatattagtcatgagttgtgaataattgctctttcaaaccagtgcacaagcacaagatgtattgagtagcgagtcaagaagcacatttgcttggaaag |
185 |
Q |
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| T |
80191 |
agtatattagtcatgagttgtgaaaaattgatctttcaaaccagtgcacaag------atgtatcaagtagcaagtcaagaagcacattcgcttgaaaac |
80098 |
T |
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| Q |
186 |
taatcattcgagaaagtcactacaccagtaccacacagccaggtctagaaagaactacaaaca |
248 |
Q |
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| T |
80097 |
taatcattcgagagatccactacaccagtaccacacgaccaggtctagaaagcactacaaaca |
80035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 79987 - 79922
Alignment:
| Q |
314 |
aaaataaaaatttgttttatgcatgtcctcggagacttctctgtcaaataaataggagttttgggt |
379 |
Q |
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| T |
79987 |
aaaataaaaatttgttttatgtatgtcctcggagacttctctgtcaaataaataggagatttgggt |
79922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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