View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6972_high_7 (Length: 241)
Name: NF6972_high_7
Description: NF6972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6972_high_7 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5755757 - 5755987
Alignment:
| Q |
1 |
atttctctcaatacaaataatttttccaaaattaaagaaaataattggctctaattgtaagctatcatataagtttacaagataattcaaaatatattta |
100 |
Q |
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|||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5755757 |
atttctgtcaataaaaatattttttccaaaattaaagaaaataattggctctaattataagctatcatataagtttacaagataattcaaaatatattta |
5755856 |
T |
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| Q |
101 |
agttgtattgcaatgttatgataatcatcttacaacattttggtgaccaatttcactttttatgtctctaatttccatttg----ctcaatttttctaca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5755857 |
agttgtattgcaatgttatgataatcatcttacaacgttttggtgaccaatttcactttttatgtctctaatttccatttgtcatctcaatttttctaca |
5755956 |
T |
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| Q |
197 |
gtatcttacaaattctaatgattttgttgat |
227 |
Q |
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| T |
5755957 |
atatcttacaaattctaattattttgttgat |
5755987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5762828 - 5763055
Alignment:
| Q |
1 |
atttctctcaatacaaataattttt-ccaaaattaaagaaaataattggctctaattgtaagctatcatataagtttacaagataattcaaaatatattt |
99 |
Q |
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|||| ||||||||| |||||||||| || |||||||| ||||||||| ||||| || |||| |||||||||||||||||| ||||||||||||||||| |
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| T |
5762828 |
atttatctcaatactaataattttttccgaaattaaaataaataattgactctatttataaggtatcatataagtttacaatgtaattcaaaatatattt |
5762927 |
T |
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| Q |
100 |
aagttgtattgcaatgttatgataatcatcttacaacattttggtgaccaatttcactttttatgtctctaatttccattt----gctcaatttttctac |
195 |
Q |
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| T |
5762928 |
aagttgtattgcaatgttatgaaaattatcttgctacattttggtgaccaatttcactttttatgtctctaatttccatttatcatctcaatttttctac |
5763027 |
T |
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| Q |
196 |
agtatcttacaaattctaatgattttgt |
223 |
Q |
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| T |
5763028 |
attatcttacaaattctaatgattttgt |
5763055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 8831298 - 8831208
Alignment:
| Q |
1 |
atttctctcaatacaaataatttttccaaaattaaagaaaataattggctctaattgtaagctatcatataagtttacaagataattcaaa |
91 |
Q |
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|||||||||||||||| ||||||| | |||| |||||||||||||| |||| || || | ||||||||||||| |||||||||||| |
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| T |
8831298 |
atttctctcaatacaattaattttccaaaaacaaaagaaaataattgcttctatttaaaatcgctcatataagtttatgagataattcaaa |
8831208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 44278 - 44132
Alignment:
| Q |
1 |
atttctctcaatacaaataatttttccaaaattaaagaaaataattggctctaattgtaagctatcatataagtttacaagataattcaaaatatattta |
100 |
Q |
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|||||||||| ||| | || |||| ||||||||||||| ||||||||| |||| || ||||||||||||||||||| |||||||||||||||| | || |
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| T |
44278 |
atttctctcagtaccattagttttcccaaaattaaagataataattggatctatttagaagctatcatataagtttataagataattcaaaataaacata |
44179 |
T |
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| Q |
101 |
agttgtattgcaatgttatgataatcatcttacaacattttggtgaccaa |
150 |
Q |
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|||||||||||| ||||||||||| ||||| |||||||||||||||| |
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| T |
44178 |
agttgtattgcattgttatgataactatctt---acattttggtgaccaa |
44132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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