View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6972_low_1 (Length: 704)

Name: NF6972_low_1
Description: NF6972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6972_low_1
NF6972_low_1
[»] chr7 (1 HSPs)
chr7 (9-689)||(29563196-29563876)


Alignment Details
Target: chr7 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 9 - 689
Target Start/End: Complemental strand, 29563876 - 29563196
Alignment:
Q  9 atggacatcaaatggtctatacgtaacaagtatataatcttggtacacatccatcacaattggtttcgcaaacaatggttttcgacagagcaatgagctt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563876 atggacatcaaatggtctatacgtaacaagtatataatcttggtacacatccatcacaattggtttcgcaaacaatggttttcgacagagcaatgagctt 29563777  T
Q  109 tgatcaaggtgatatcttgggtaaaagagcaattcatacctgagataaataaggagacgtaagagaccattgaatgtagaataaaatgtttcgtatgttg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29563776 tgatcaaggtgatatcttgggtaaaagagcaattcatacctgagataaataaggagacataagagaccattgaatgtagaataaaatgtttcgtatgttg 29563677  T
Q  209 cagaatgatacagttaatgttgcaaaaattatagttttaagttcaatctgacctagactttgaaaagcaaaataagtgggtaaaaaactgaacatccttt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29563676 cagaatgatacagttaatgttgcaaaaattatagttttaagttcaatcagacctagactttgaaaagcaaattaagtgggtaaaaaactgaacatccttt 29563577  T
Q  309 aaatcaggcttttccaggcatgtacattgttaaacaacaatcagctnnnnnnnttatttttgacaaacaatataatttgcaagaaccaaccacatgaaat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  29563576 aaatcaggcttttccaggcatgtacattgttaaacaacaatcagctaaaaaaattatttttgacaaacaatataatttgcaagaaccaaccacatgaaat 29563477  T
Q  409 acgtaagcaaataaaagtatctcacgtgttggaagaatcaatatagttgcagacaacgacaatctttcccagccatagcaagcccttacactgaatcttt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563476 acgtaagcaaataaaagtatctcacgtgttggaagaatcaatatagttgcagacaacgacaatctttcccagccatagcaagcccttacactgaatcttt 29563377  T
Q  509 tgttcctgggtaacatctccaaagactctccatcttttcattcgtatatcatacaatatcaaaccatgaagaccagcaaccgctaagtacattccatcct 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29563376 tgttcctgggtaacatctccaaagactctccatcttttcattcgtatatcatacaatatcaaaccatgaagaccagcaaccgccaagtacattccatcct 29563277  T
Q  609 gactagctgccacatattgaacaggccagttttgggaaatataagaaacctgtggaaattttaaaattttagaagtgatgt 689  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563276 gactagctgccacatattgaacaggccagttttgggaaatataagaaacctgtggaaattttaaaattttagaagtgatgt 29563196  T

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