View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6972_low_10 (Length: 252)

Name: NF6972_low_10
Description: NF6972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6972_low_10
NF6972_low_10
[»] chr7 (15 HSPs)
chr7 (1-239)||(5755468-5755708)
chr7 (99-227)||(5762551-5762681)
chr7 (25-115)||(30551947-30552039)
chr7 (24-131)||(28003343-28003450)
chr7 (25-115)||(6589558-6589650)
chr7 (24-131)||(18128520-18128629)
chr7 (28-115)||(20389644-20389734)
chr7 (24-115)||(41331327-41331420)
chr7 (24-116)||(32857980-32858075)
chr7 (25-123)||(1532441-1532538)
chr7 (38-115)||(23822251-23822330)
chr7 (34-116)||(12422352-12422435)
chr7 (28-57)||(3218074-3218103)
chr7 (24-73)||(5762703-5762752)
chr7 (31-79)||(32804629-32804677)
[»] chr1 (10 HSPs)
chr1 (25-115)||(16554304-16554396)
chr1 (24-118)||(802253-802349)
chr1 (34-131)||(2378113-2378212)
chr1 (29-118)||(12656368-12656458)
chr1 (29-124)||(48130173-48130268)
chr1 (32-116)||(46530162-46530248)
chr1 (24-118)||(47600659-47600754)
chr1 (28-115)||(363615-363705)
chr1 (34-79)||(46530411-46530456)
chr1 (24-80)||(25112508-25112564)
[»] chr2 (9 HSPs)
chr2 (63-131)||(45385841-45385911)
chr2 (24-131)||(8198648-8198756)
chr2 (24-131)||(8203408-8203516)
chr2 (28-116)||(3289442-3289532)
chr2 (24-117)||(4558914-4559009)
chr2 (63-118)||(8198416-8198473)
chr2 (63-118)||(8203176-8203233)
chr2 (63-118)||(5539073-5539131)
chr2 (90-131)||(45385920-45385961)
[»] chr8 (11 HSPs)
chr8 (31-117)||(2277209-2277297)
chr8 (34-131)||(15907692-15907790)
chr8 (28-118)||(45445197-45445287)
chr8 (24-79)||(37064691-37064746)
chr8 (74-131)||(41151-41209)
chr8 (32-118)||(3807008-3807094)
chr8 (32-131)||(8453004-8453104)
chr8 (89-131)||(12807703-12807745)
chr8 (24-131)||(15907946-15908055)
chr8 (90-131)||(34305232-34305273)
chr8 (63-115)||(45444993-45445045)
[»] chr4 (9 HSPs)
chr4 (33-131)||(33617909-33618007)
chr4 (24-131)||(22519809-22519918)
chr4 (23-118)||(2323284-2323381)
chr4 (29-123)||(22889578-22889674)
chr4 (29-123)||(22941242-22941338)
chr4 (28-118)||(20141742-20141835)
chr4 (32-114)||(14152178-14152258)
chr4 (32-115)||(34717576-34717659)
chr4 (44-113)||(34013792-34013861)
[»] chr6 (5 HSPs)
chr6 (32-123)||(33547742-33547836)
chr6 (28-118)||(16419594-16419689)
chr6 (24-131)||(16419837-16419946)
chr6 (30-124)||(7202262-7202356)
chr6 (25-131)||(12458392-12458501)
[»] chr5 (10 HSPs)
chr5 (24-115)||(37705096-37705189)
chr5 (28-116)||(29532053-29532142)
chr5 (32-131)||(30384197-30384297)
chr5 (32-117)||(13953532-13953618)
chr5 (38-115)||(29531876-29531954)
chr5 (65-123)||(26325910-26325970)
chr5 (31-79)||(42474901-42474949)
chr5 (80-131)||(10415458-10415509)
chr5 (32-121)||(10532376-10532469)
chr5 (74-118)||(37705088-37705132)
[»] chr3 (11 HSPs)
chr3 (24-115)||(44291415-44291508)
chr3 (30-118)||(44290993-44291081)
chr3 (41-118)||(33291581-33291660)
chr3 (25-131)||(51265634-51265739)
chr3 (31-118)||(53509226-53509314)
chr3 (137-196)||(19296176-19296235)
chr3 (137-195)||(19203353-19203410)
chr3 (35-131)||(1662257-1662354)
chr3 (90-123)||(46476848-46476881)
chr3 (32-129)||(34079694-34079793)
chr3 (31-118)||(30534425-30534513)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5755708 - 5755468
Alignment:
Q  1 ttctgatgatggtgatacggaaaaaaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaattaaagggccaatttgttaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5755708 ttctgatgatggtgatacggaaaaaaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaattaaagggccaatttgttaca 5755609  T
Q  101 attaaataacttaaaggatctctggtgtaata-agcttttttcttataagcatgcttatgttttttgaggaaaaacaaactcatgattagtcatttcgcg 199  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5755608 attaaataacttaaaggatctctggtgtaatatagtctttttcttataagcatgcttatattttttgaggaaaaacaaactcatgattagtcatttcgcg 5755509  T
Q  200 aggaatcccaaattacataatttttaat-tcaagtattcat 239  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  5755508 aggaatcccaaattacataatttttaatctcaagtattcat 5755468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 5762681 - 5762551
Alignment:
Q  99 caattaaataacttaaaggatctctggtgtaata-agcttttttcttataagcatgcttatgttttttgaggaaaaa-caaactcatgattagtcatttc 196  Q
    |||||||||||||||||| | ||||||||||||  | | ||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||||||     
T  5762681 caattaaataacttaaagaacctctggtgtaatttaccctttttcttatatgcatgcttatattttttgagaaaaaaacaaactcatgattagtcatttt 5762582  T
Q  197 gcgaggaatcccaaattacataatttttaat 227  Q
      | || |||||||||||||| |||||||||    
T  5762581 ctgtggtatcccaaattacatgatttttaat 5762551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 30551947 - 30552039
Alignment:
Q  25 aaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaa 115  Q
    ||||||||||||||||||||| |||||| |||||||  |||||||||| ||||||  ||||||| ||||||| ||||||||||||||||||||    
T  30551947 aaggaccaacttgttacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaa 30552039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 28003343 - 28003450
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaattaaagggccaatttgttacaattaaataacttaaaggatctct 123  Q
    |||||| |||||||||||| ||||||||| |||| ||  ||| ||||||||||||| | || |  ||| ||||||||||||||||| ||||||| || ||    
T  28003343 aaaggatcaacttgttacatttaattaacttaaaggacctaattggtacgaaaaaacttaacgatcaacttgttacaattaaataatttaaaggttcgct 28003442  T
Q  124 ggtgtaat 131  Q
    ||||||||    
T  28003443 ggtgtaat 28003450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 6589558 - 6589650
Alignment:
Q  25 aaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaa 115  Q
    |||||||||||| |||||||| |||||| |||||||  |||||||||| ||||||  |||||||  |||||| |||||||||||| |||||||    
T  6589558 aaggaccaacttattacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggatcaatttattacaattaaattacttaaa 6589650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 18128520 - 18128629
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaaggatct 121  Q
    |||| |||||||| ||||||||||||||| ||||  |  ||||| |||||||||||  | ||||| ||||||| ||||| |||||||| |||||||| ||    
T  18128520 aaagcaccaacttattacaattaattaacttaaagaacctaagtagtacgaaaaaacttaaaaggaccaatttattacatttaaataatttaaaggacct 18128619  T
Q  122 ctggtgtaat 131  Q
     |||||||||    
T  18128620 atggtgtaat 18128629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 20389734 - 20389644
Alignment:
Q  28 gaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa---ttaaagggccaatttgttacaattaaataacttaaa 115  Q
    ||||||||||||||||||||||||| ||||  || ||||| |||||||||||   ||||||  | | ||||||||| ||||||||||||||    
T  20389734 gaccaacttgttacaattaattaacttaaagcatctaagtagtacgaaaaaaaacttaaagaactactttgttacatttaaataacttaaa 20389644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 41331327 - 41331420
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtac--gaaaaaattaaagggccaatttgttacaattaaataacttaaa 115  Q
    |||| |||||||||||| |||| |||||| |||||||  || |||||||  |||||| ||||| |  |||||| ||||||||||||||||||||    
T  41331327 aaagaaccaacttgttataatttattaacttaaatgagctaggtggtacgagaaaaacttaaatgatcaatttattacaattaaataacttaaa 41331420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 32857980 - 32858075
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacg---aaaaaattaaagggccaatttgttacaattaaataacttaaag 116  Q
    |||| |||||||| ||||||||||||||| |||| ||||||||||||| |   ||||| ||| ||| || |||| ||||||| ||||| |||||||    
T  32857980 aaagaaccaacttattacaattaattaacttaaaagatttaagtggtatggaaaaaaacttagaggacctatttattacaatcaaatatcttaaag 32858075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 1532441 - 1532538
Alignment:
Q  25 aaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa-ttaaagggccaatttgttacaattaaataacttaaaggatctct 123  Q
    ||||||||||||||||||||||| |||| ||||     ||||||||||||||||| |||||   |||| |||||  ||||||||||||||||||| ||||    
T  1532441 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacgaaaaaacttaaa--accaacttgttgtaattaaataacttaaaggacctct 1532538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 23822330 - 23822251
Alignment:
Q  38 ttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaa 115  Q
    |||||||||| ||||||||| || ||||| | |||||||||   ||||||  | ||||||||||||||||||||||||||    
T  23822330 ttacaattaaataacataaaagaattaagcgttacgaaaaatatttaaagaactaatttgttacaattaaataacttaaa 23822251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 12422352 - 12422435
Alignment:
Q  34 cttgttacaattaattaacataaatgatttaagtggtacgaaaaaa-ttaaagggccaatttgttacaattaaataacttaaag 116  Q
    ||||||| |||||| |||| |||| ||  |||||| ||| |||||| |||||||   |||||||||||||||||||||||||||    
T  12422352 cttgttaaaattaaataacttaaaagacgtaagtgatacaaaaaaacttaaaggatgaatttgttacaattaaataacttaaag 12422435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 3218103 - 3218074
Alignment:
Q  28 gaccaacttgttacaattaattaacataaa 57  Q
    ||||||||||||||||||||||||||||||    
T  3218103 gaccaacttgttacaattaattaacataaa 3218074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 5762752 - 5762703
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacg 73  Q
    |||| ||||||||||||||||||||||||||| || |  |||||||||||    
T  5762752 aaagaaccaacttgttacaattaattaacatatattacctaagtggtacg 5762703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 32804629 - 32804677
Alignment:
Q  31 caacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa 79  Q
    ||||||||| |||||||||||| ||||||| |||||| ||| |||||||    
T  32804629 caacttgttgcaattaattaacttaaatgacttaagttgtatgaaaaaa 32804677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 16554396 - 16554304
Alignment:
Q  25 aaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaa 115  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||  ||||||| ||||||| ||||||||||||||||||||    
T  16554396 aaggaccaacttgttacaattgattaacttaaatgacttaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaa 16554304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 802253 - 802349
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaagga 118  Q
    ||||||||||||||||||||||||||||   ||| ||| |||||||||||||||||  ||||||| ||||||| ||||| |||||||||||||||||    
T  802253 aaaggaccaacttgttacaattaattaattcaaaggatataagtggtacgaaaaaagtttaaaggaccaatttattacatttaaataacttaaagga 802349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 2378212 - 2378113
Alignment:
Q  34 cttgttacaattaattaacataaatgatttaagtggtacgaaaaaa---ttaaagggccaatttgttacaattaaataacttaaaggatctctggtgtaa 130  Q
    |||||||||||||| |||  |||| ||| |||||||| ||||||||   ||||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  2378212 cttgttacaattaaataatttaaaagatataagtggtgcgaaaaaaaacttaaaga-ccaatttgttataattaaataacttaaaggatctctggtgtaa 2378114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 12656368 - 12656458
Alignment:
Q  29 accaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaatt-aaagggccaatttgttacaattaaataacttaaagga 118  Q
    |||||||| ||||||||||||||| |||| | ||||||||||||||||||||| |||    |||| |||||||||||||||||||||||||    
T  12656368 accaacttattacaattaattaacttaaagggtttaagtggtacgaaaaaatttaaaaaatcaatatgttacaattaaataacttaaagga 12656458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 48130268 - 48130173
Alignment:
Q  29 accaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaattaaagggccaatttgttacaattaaataacttaaaggatctctg 124  Q
    |||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||   |  |||| || ||||||||||||||| |||| |||||    
T  48130268 accaacttgttacaattaattaacttaaatgatctaagtggtacaaaaaacttaaacaactgatttatttcaattaaataacttagaggacctctg 48130173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 46530248 - 46530162
Alignment:
Q  32 aacttgttacaattaattaacataaatgatttaagtggtacgaaaa--aattaaagggccaatttgttacaattaaataacttaaag 116  Q
    ||||||||||||||||||||| |||| ||  |||||||| ||||||  ||||||||  ||| ||||| |||||||||||||||||||    
T  46530248 aacttgttacaattaattaacttaaaagacctaagtggtgcgaaaaagaattaaagaaccagtttgtgacaattaaataacttaaag 46530162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 47600659 - 47600754
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaat-taaagggccaatttgttacaattaaataacttaaagga 118  Q
    ||||||| ||||||||||||||||||| ||||||  | |||| | |||| ||||||| |||||| ||||| | |||||||||||||| ||||||||    
T  47600659 aaaggactaacttgttacaattaattatcataaaaaagttaaattgtaccaaaaaatgtaaaggaccaatatattacaattaaataatttaaagga 47600754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 363705 - 363615
Alignment:
Q  28 gaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa---ttaaagggccaatttgttacaattaaataacttaaa 115  Q
    ||||||||||||||||||||||||||||||  |  |||||| ||| ||||||   ||||||  || |||| ||||||||||||||||||||    
T  363705 gaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaaagacttaaagaacctatttattacaattaaataacttaaa 363615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 46530411 - 46530456
Alignment:
Q  34 cttgttacaattaattaacataaatgatttaagtggtacgaaaaaa 79  Q
    ||||||||||||||||||| |||||||  | |||||||||||||||    
T  46530411 cttgttacaattaattaacttaaatgacgtgagtggtacgaaaaaa 46530456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 25112564 - 25112508
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaat 80  Q
    |||||| |||||| ||||||||||||| | ||||| | |||||||||| ||||||||    
T  25112564 aaaggatcaacttattacaattaattagcttaaataacttaagtggtatgaaaaaat 25112508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 45385911 - 45385841
Alignment:
Q  63 taagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaaggatctctggtgtaat 131  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  45385911 taagtggtacgaaaaaaacttaaagggccaatttgttacaattaaataacttaaaggacctatggtgtaat 45385841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 8198648 - 8198756
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacg-aaaaaattaaagggccaatttgttacaattaaataacttaaaggatctc 122  Q
    ||||| ||||||| ||||||||||||| | |||| ||  ||||||||||| |||||| | || | |||||||||||||||||| ||||||||||||| ||    
T  8198648 aaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaacttaaagaccaatttgttacaattaactaacttaaaggatttc 8198747  T
Q  123 tggtgtaat 131  Q
    |||| ||||    
T  8198748 tggtataat 8198756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 8203408 - 8203516
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacg-aaaaaattaaagggccaatttgttacaattaaataacttaaaggatctc 122  Q
    ||||| ||||||| ||||||||||||| | |||| ||  ||||||||||| |||||| | || | |||||||||||||||||| ||||||||||||| ||    
T  8203408 aaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaacttaaagaccaatttgttacaattaactaacttaaaggatttc 8203507  T
Q  123 tggtgtaat 131  Q
    |||| ||||    
T  8203508 tggtataat 8203516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 3289442 - 3289532
Alignment:
Q  28 gaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaag 116  Q
    |||||||||||||||||||||| |  |||| |||||||||| ||| ||||||  ||||| | ||||||| |||||||||||||| ||||||    
T  3289442 gaccaacttgttacaattaattcaattaaaagatttaagtgatacaaaaaaaacttaaaagaccaatttattacaattaaataatttaaag 3289532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 4558914 - 4559009
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa---ttaaagggccaatttgttacaattaaataacttaaagg 117  Q
    |||||| |||||||||||||||||||||||||||  |  ||||| |||| ||||||   ||||| |  |||||| ||||||||||||||||||||||    
T  4558914 aaaggaacaacttgttacaattaattaacataaagtacctaagttgtaccaaaaaaaacttaaa-gatcaatttattacaattaaataacttaaagg 4559009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 8198473 - 8198416
Alignment:
Q  63 taagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaagga 118  Q
    |||||||||||||||||  ||||||  ||||||| |||||||||||||||||||||||    
T  8198473 taagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaagga 8198416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 8203233 - 8203176
Alignment:
Q  63 taagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaagga 118  Q
    |||||||||||||||||  ||||||  ||||||| |||||||||||||||||||||||    
T  8203233 taagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaagga 8203176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 5539131 - 5539073
Alignment:
Q  63 taagtggtacgaaaaaa---ttaaagggccaatttgttacaattaaataacttaaagga 118  Q
    |||||||||||||||||   ||||||| ||||||| ||||||||||||| |||||||||    
T  5539131 taagtggtacgaaaaaaaacttaaaggaccaatttattacaattaaatagcttaaagga 5539073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 45385920 - 45385961
Alignment:
Q  90 aatttgttacaattaaataacttaaaggatctctggtgtaat 131  Q
    |||||||| |||||||||||||||||||| |||| |||||||    
T  45385920 aatttgttccaattaaataacttaaaggacctctagtgtaat 45385961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 2277209 - 2277297
Alignment:
Q  31 caacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaagg 117  Q
    |||||||||||||||||||||| |||| ||  |||||||||| ||||||  |||||||  |||||||||||||||||||||||||||||    
T  2277209 caacttgttacaattaattaacttaaaggacctaagtggtacaaaaaaaacttaaaggatcaatttgttacaattaaataacttaaagg 2277297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 15907790 - 15907692
Alignment:
Q  34 cttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaaggatctctggtgtaat 131  Q
    ||||||| ||||||||||| ||||  || |||||||||||||||||  ||||||  ||||||| | |||| ||||||||||||||||| |||||||||||    
T  15907790 cttgttataattaattaacttaaagaatataagtggtacgaaaaaaacttaaaga-ccaatttatcacaagtaaataacttaaaggatttctggtgtaat 15907692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 45445197 - 45445287
Alignment:
Q  28 gaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaattaaagggccaatttgttacaattaaataacttaaagga 118  Q
    |||||| || |||| ||||||||||||||||||| |||||  ||  |||||| ||||   ||||||| |||||||||||||||||||||||    
T  45445197 gaccaatttattacgattaattaacataaatgatctaagttatataaaaaaaataaaaaaccaatttattacaattaaataacttaaagga 45445287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 37064691 - 37064746
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa 79  Q
    ||||||||||||||||| ||||||||||| |||| || ||||||||| ||||||||    
T  37064691 aaaggaccaacttgttataattaattaacttaaaggacttaagtggtgcgaaaaaa 37064746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 41151 - 41209
Alignment:
Q  74 aaaaaattaaagggccaatttgttacaattaaataacttaaaggatctc-tggtgtaat 131  Q
    ||||| ||||||| | |||||||||||||||||||| |||||||||||| |||||||||    
T  41151 aaaaacttaaaggactaatttgttacaattaaataatttaaaggatctcttggtgtaat 41209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 3807008 - 3807094
Alignment:
Q  32 aacttgttacaattaattaacataaatgatttaagtggtacgaaaaaattaaagggccaatttgttacaattaaataacttaaagga 118  Q
    ||||||||| ||||||||||| |||| ||  ||||| |||  ||||| ||| ||| |||||||||||| ||||||||| ||||||||    
T  3807008 aacttgttaaaattaattaacttaaaagacataagttgtataaaaaacttagaggaccaatttgttactattaaataatttaaagga 3807094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 8453104 - 8453004
Alignment:
Q  32 aacttgttacaattaattaacataaatgatttaagtggtacg-aaaaaattaaagggccaatttgttacaattaaataacttaaaggatctctggtgtaa 130  Q
    ||||||| ||||||||||||  |||  ||| ||||||||||| |||||||| ||   ||||||| | ||||| ||||||| |||||||||||| ||||||    
T  8453104 aacttgtaacaattaattaatttaatggatgtaagtggtacggaaaaaatttaaaaaccaatttatcacaatgaaataacgtaaaggatctctagtgtaa 8453005  T
Q  131 t 131  Q
    |    
T  8453004 t 8453004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 12807703 - 12807745
Alignment:
Q  89 caatttgttacaattaaataacttaaaggatctctggtgtaat 131  Q
    |||||| | |||||||||||||||||| |||||||||||||||    
T  12807703 caatttataacaattaaataacttaaaagatctctggtgtaat 12807745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 15907946 - 15908055
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaaggatct 121  Q
    |||||| |||||||||| ||||||||||| ||||  |  ||||||||| |||||||  |||||   | ||||| ||||| ||||||| |||||||||| |    
T  15907946 aaaggatcaacttgttataattaattaacctaaaaaacctaagtggtatgaaaaaaacttaaataactaatttattacagttaaatatcttaaaggattt 15908045  T
Q  122 ctggtgtaat 131  Q
     |||||||||    
T  15908046 ttggtgtaat 15908055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 34305232 - 34305273
Alignment:
Q  90 aatttgttacaattaaataacttaaaggatctctggtgtaat 131  Q
    |||||||||||||||||||| |||||||||||| | ||||||    
T  34305232 aatttgttacaattaaataatttaaaggatctccgttgtaat 34305273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 45445045 - 45444993
Alignment:
Q  63 taagtggtacgaaaaaattaaagggccaatttgttacaattaaataacttaaa 115  Q
    |||||| |||||||||||| || | ||||||| |||| |||||||||||||||    
T  45445045 taagtgttacgaaaaaatttaaagaccaatttattacgattaaataacttaaa 45444993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 33617909 - 33618007
Alignment:
Q  33 acttgttacaattaattaacataaatgatttaagtggtacgaaaaaattaaagggccaatttgttacaattaaataacttaaaggatctctggtgtaat 131  Q
    |||| ||||| ||||||||| |||| ||  |||| ||||||||||| ||||||| ||||||| |||||||||||||||||||| || |||| |||||||    
T  33617909 acttattacacttaattaacttaaaggacctaagcggtacgaaaaacttaaaggaccaatttattacaattaaataacttaaatgacctcttgtgtaat 33618007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 22519809 - 22519918
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacg---aaaaaattaaagggccaatttgttacaattaaataacttaaaggatc 120  Q
    |||||| |||||||||| ||||||||||| |||| ||  |||||||||||   ||||| || |||| |||||||||||||||||||||| ||||| || |    
T  22519809 aaaggatcaacttgttataattaattaacttaaaagacctaagtggtacggaaaaaaactttaaggaccaatttgttacaattaaataatttaaa-gacc 22519907  T
Q  121 tctggtgtaat 131  Q
    |||||||||||    
T  22519908 tctggtgtaat 22519918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 2323381 - 2323284
Alignment:
Q  23 aaaaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaagga 118  Q
    ||||| || ||||||||||||||||||||| | || ||  ||  |||||| ||||||  ||||||||| |||||||||||||||||||| ||||||||    
T  2323381 aaaagcactaacttgttacaattaattaacttgaaagaactacatggtaccaaaaaaacttaaagggctaatttgttacaattaaataatttaaagga 2323284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 22889674 - 22889578
Alignment:
Q  29 accaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaaggatctct 123  Q
    ||||||||||||||||| |||||| |||| |||  ||| ||||| ||||||  || |||| ||||||| ||| |||||||||||||||| |||||||    
T  22889674 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaatgatctct 22889578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 22941338 - 22941242
Alignment:
Q  29 accaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaaggatctct 123  Q
    ||||||||||||||||| |||||| |||| |||  ||| ||||| ||||||  || |||| ||||||| ||| |||||||||||||||| |||||||    
T  22941338 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaatgatctct 22941242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 20141835 - 20141742
Alignment:
Q  28 gaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa---ttaaagggccaatttgttacaattaaataacttaaagga 118  Q
    ||||||||||||||||||||||||||||||  |  |||||| ||| ||||||   ||||||  || | || |||||||||||||||||||||||    
T  20141835 gaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaaagacttaaagaacctacttattacaattaaataacttaaagga 20141742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 14152258 - 14152178
Alignment:
Q  32 aacttgttacaattaattaacataaatgatttaagtggtacgaaaaaattaaagggccaatttgttacaattaaataacttaa 114  Q
    |||||||||||||||| |||| ||||  || ||| |||||| |||||||| || | ||||||| |||||| ||||||||||||    
T  14152258 aacttgttacaattaaataacttaaa--atataaatggtacaaaaaaatttaaagaccaatttattacaagtaaataacttaa 14152178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 34717576 - 34717659
Alignment:
Q  32 aacttgttacaattaattaacataaatgatttaagtggtacgaaaaaattaaagggccaatttgttacaattaaataacttaaa 115  Q
    |||||||| |||||||||||| |||| || ||| ||| |||||||||| | ||   | ||||| ||||||||||||||||||||    
T  34717576 aacttgtttcaattaattaacttaaaagacttaggtgatacgaaaaaacttaaatacaaatttattacaattaaataacttaaa 34717659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 34013792 - 34013861
Alignment:
Q  44 ttaattaacataaatgatttaagtggtacgaaaaaattaaagggccaatttgttacaattaaataactta 113  Q
    ||||||||  |||| || |||||| ||| |||||||||||| |   ||||||||||||||||||||||||    
T  34013792 ttaattaatttaaaggacttaagtagtatgaaaaaattaaatgattaatttgttacaattaaataactta 34013861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 33547836 - 33547742
Alignment:
Q  32 aacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa---ttaaagggccaatttgttacaattaaataacttaaaggatctct 123  Q
    ||||||||||||||||||||| |||| ||  ||||||| || |||| |   ||||||| ||||||||||||||||||||||||||||||| ||||    
T  33547836 aacttgttacaattaattaacttaaaggacataagtggaacaaaaataaacttaaaggaccaatttgttacaattaaataacttaaaggacctct 33547742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 16419689 - 16419594
Alignment:
Q  28 gaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa-----ttaaagggccaatttgttacaattaaataacttaaagga 118  Q
    ||||||||||||||||||||||||| |||||||| ||| |||||| ||| ||     || || |  ||||||||||||||||||||||||||||||    
T  16419689 gaccaacttgttacaattaattaacttaaatgatctaattggtacaaaagaaaatacttcaatgatcaatttgttacaattaaataacttaaagga 16419594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 16419837 - 16419946
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaat--taaagggccaatttgttacaattaaataacttaaaggatct 121  Q
    ||||||| | ||||||||||||||||| | || | ||| |||||| |||| |||||   |||||| ||||||||||||||||||||| ||||||||| ||    
T  16419837 aaaggactagcttgttacaattaattagcttataggatctaagtgatacggaaaaaccataaaggaccaatttgttacaattaaatagcttaaaggacct 16419936  T
Q  122 ctggtgtaat 131  Q
    | | ||||||    
T  16419937 ccgatgtaat 16419946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 7202356 - 7202262
Alignment:
Q  30 ccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaaggatctctg 124  Q
    ||||| |||||||||||||||||||||| ||  ||| |||||||||||||  |||||   ||||||| ||| | ||||||||||||||||| |||||    
T  7202356 ccaacatgttacaattaattaacataaaggacctaaatggtacgaaaaaaacttaaaa--ccaatttattatatttaaataacttaaaggacctctg 7202262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 12458392 - 12458501
Alignment:
Q  25 aaggaccaacttgttacaattaattaacataaatgatttaagtggtacg---aaaaaattaaagggccaatttgttacaattaaataacttaaaggatct 121  Q
    |||||||||||||||  |||| |||||| |||| ||  ||||  |||||   ||||| ||||||  |||| ||||||||||||||||||||||||||  |    
T  12458392 aaggaccaacttgttttaatttattaacttaaaggacctaagaagtacgggaaaaaacttaaagtaccaaattgttacaattaaataacttaaaggactt 12458491  T
Q  122 ctggtgtaat 131  Q
    || |||||||    
T  12458492 ctagtgtaat 12458501  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 37705096 - 37705189
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaa 115  Q
    ||||||||||||||||| ||||||||||| |||| ||  ||||||||||| |||||  ||||| | ||||||| |||||| |||||||||||||    
T  37705096 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaatcttaaatgaccaatttcttacaactaaataacttaaa 37705189  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 29532053 - 29532142
Alignment:
Q  28 gaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaatt-aaagggccaatttgttacaattaaataacttaaag 116  Q
    ||||||||| ||||| ||||||||||||||  |  |||||| |||||||||||| |||||  ||||||||||||||| ||||||||||||    
T  29532053 gaccaactttttacagttaattaacataaagaagctaagtgatacgaaaaaatttaaaggttcaatttgttacaattgaataacttaaag 29532142  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 30384297 - 30384197
Alignment:
Q  32 aacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa-ttaaagggccaatttgttacaattaaataacttaaaggatctctggtgtaa 130  Q
    |||||||||||||||| |||| |||| ||  |||||  |||||||||| ||||| | | ||||||||||||||||||||||||||| ||||| | |||||    
T  30384297 aacttgttacaattaaataacttaaaagacgtaagtaatacgaaaaaacttaaaagacaaatttgttacaattaaataacttaaagaatctccgatgtaa 30384198  T
Q  131 t 131  Q
    |    
T  30384197 t 30384197  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 13953532 - 13953618
Alignment:
Q  32 aacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa-ttaaagggccaatttgttacaattaaataacttaaagg 117  Q
    ||||||||||||||||||||| ||||||| ||||| |||| ||||||| |||||   ||||||| ||| ||||||| ||||||||||    
T  13953532 aacttgttacaattaattaacttaaatgacttaagcggtatgaaaaaacttaaaaaaccaatttattataattaaacaacttaaagg 13953618  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 29531954 - 29531876
Alignment:
Q  38 ttacaattaattaacataaatgatttaagtggtacgaaaaaa-ttaaagggccaatttgttacaattaaataacttaaa 115  Q
    |||||||||| |||| |||||||  ||| || |||||||||| ||||||| | ||||| ||||||||||||||||||||    
T  29531954 ttacaattaaataacttaaatgacgtaaatgatacgaaaaaacttaaaggactaatttattacaattaaataacttaaa 29531876  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 26325910 - 26325970
Alignment:
Q  65 agtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaaggatctct 123  Q
    |||||||||||||||  ||||||| | |||||  |||||||||||||||||||||||||||    
T  26325910 agtggtacgaaaaaaatttaaaggactaatttaatacaattaaataacttaaaggatctct 26325970  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 42474949 - 42474901
Alignment:
Q  31 caacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa 79  Q
    |||||| ||||||||||||||| |||| |||||||||||||| ||||||    
T  42474949 caacttattacaattaattaacttaaaagatttaagtggtacaaaaaaa 42474901  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 10415458 - 10415509
Alignment:
Q  80 ttaaagggccaatttgttacaattaaataacttaaaggatctctggtgtaat 131  Q
    |||||||  |||||| |||||||||||||||||||| ||||||| |||||||    
T  10415458 ttaaaggatcaatttattacaattaaataacttaaaagatctctcgtgtaat 10415509  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 10532376 - 10532469
Alignment:
Q  32 aacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa---ttaaagggccaatttgtt-acaattaaataacttaaaggatct 121  Q
    ||||||| |||||||| |||| || | ||| |||||||||||||||||   ||||| | |||||||||| | |||||||||||||||| |||||    
T  10532376 aacttgtgacaattaaataacttataagatgtaagtggtacgaaaaaaaacttaaatgaccaatttgttaataattaaataacttaaaagatct 10532469  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 37705088 - 37705132
Alignment:
Q  74 aaaaaattaaagggccaatttgttacaattaaataacttaaagga 118  Q
    ||||||||||||| |||| |||||| |||||| ||||||||||||    
T  37705088 aaaaaattaaaggaccaacttgttataattaattaacttaaagga 37705132  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 44291415 - 44291508
Alignment:
Q  24 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaa 115  Q
    ||||||| |||||||||||||||| |||| |||| ||  |||||| ||| ||||||  ||| ||| ||||||||||||||||||||||||||||    
T  44291415 aaaggactaacttgttacaattaaataacttaaaggacataagtgatactaaaaaaatttagaggaccaatttgttacaattaaataacttaaa 44291508  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 44291081 - 44290993
Alignment:
Q  30 ccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaagga 118  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||||  |||||     | |||||||||||||||||||||||||||    
T  44291081 ccaacttgttacaactaattaacttaaatgacttaagtggtacgaaaaaaacttaaa--aaaattttgttacaattaaataacttaaagga 44290993  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 33291581 - 33291660
Alignment:
Q  41 caattaattaacataaatgatttaagtggtacgaaaaaa--ttaaagggccaatttgttacaattaaataacttaaagga 118  Q
    |||||||||||| |||||||  |||||||||  ||||||  ||||||  | |||||||||||||||||||||||||||||    
T  33291581 caattaattaacttaaatgacataagtggtataaaaaaagtttaaagtactaatttgttacaattaaataacttaaagga 33291660  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 51265739 - 51265634
Alignment:
Q  25 aaggaccaacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa-ttaaagggccaatttgttacaattaaataacttaaaggatctct 123  Q
    ||||||||||||||||||||||| |||| ||||     ||||||||||||||||| |||||   |||| |||||  ||||||||||||||||||| ||||    
T  51265739 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacgaaaaaacttaaa--accaacttgttgtaattaaataacttaaaggacctct 51265642  T
Q  124 ggtgtaat 131  Q
     |||||||    
T  51265641 tgtgtaat 51265634  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 53509314 - 53509226
Alignment:
Q  31 caacttgttacaattaattaacataaatgatttaagtggtacgaaaa-aattaaagggccaatttgttacaattaaataacttaaagga 118  Q
    |||||| ||||||||||||||| ||||  |||||| ||||||||||| ||||  | | | ||||||||| |||||||||||||||||||    
T  53509314 caactttttacaattaattaacttaaagaatttaattggtacgaaaataatttgaagacaaatttgttataattaaataacttaaagga 53509226  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 19296176 - 19296235
Alignment:
Q  137 tttttcttataagcatgcttatgttttttgaggaaaaacaaactcatgattagtcatttc 196  Q
    |||||||||||  ||||||||| ||| ||||||||||||||  |||||||||||||||||    
T  19296176 tttttcttatatccatgcttatatttattgaggaaaaacaagatcatgattagtcatttc 19296235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 19203410 - 19203353
Alignment:
Q  137 tttttcttataagcatgcttatgttttttgaggaaaaacaaactcatgattagtcattt 195  Q
    ||||||||||| || ||||||| |||||| |||| ||||||||||||||||||||||||    
T  19203410 tttttcttatatgcgtgcttatatttttt-aggagaaacaaactcatgattagtcattt 19203353  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 1662257 - 1662354
Alignment:
Q  35 ttgttacaattaattaacataaatgatttaagtggtacgaaaaaa-ttaaagggccaatttgttacaattaaataacttaaaggatctctggtgtaat 131  Q
    ||||||||||||||||||||||  ||| |||||||||  |||||| ||||| |  |||||| || ||||||||||  |||||||| ||||| ||||||    
T  1662257 ttgttacaattaattaacataatggatctaagtggtataaaaaaacttaaaagatcaatttattgcaattaaatactttaaaggacctctgatgtaat 1662354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 46476881 - 46476848
Alignment:
Q  90 aatttgttacaattaaataacttaaaggatctct 123  Q
    ||||||||||||||||||||||||||||||||||    
T  46476881 aatttgttacaattaaataacttaaaggatctct 46476848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 34079694 - 34079793
Alignment:
Q  32 aacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa---ttaaagggccaatttgttacaattaaataacttaaaggatctctggtgt 128  Q
    |||||| ||||||||| |||| |||| ||| |||||||||| ||||||   |||||   |||| |||||| ||||||||||||||||| |||||| ||||    
T  34079694 aacttgctacaattaaataac-taaaagatgtaagtggtacaaaaaaagacttaaaaacccaacttgttataattaaataacttaaagaatctctagtgt 34079792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 30534513 - 30534425
Alignment:
Q  31 caacttgttacaattaattaacataaatgatttaagtggtacgaaaaaa---ttaaagggccaatttgttacaattaaataacttaaagga 118  Q
    |||||| |||||||||||||||||||| ||  |||| ||||| ||||||   ||||| | ||||||| |||||||||||||||| ||||||    
T  30534513 caactttttacaattaattaacataaa-gacctaagcggtacaaaaaaaaacttaaaagaccaattt-ttacaattaaataactcaaagga 30534425  T

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