View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6972_low_12 (Length: 244)
Name: NF6972_low_12
Description: NF6972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6972_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 47798881 - 47798650
Alignment:
| Q |
1 |
gttgactccacatataggttttattctttattttatctagaatagtaattggacttagattaagaagcaagatataggtgatacatgtatagtactaaaa |
100 |
Q |
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| T |
47798881 |
gttgactccacatataggttttattctttattttatctagaatagtaattggacttagattaagaagcaagatataggtgatatatgtatagtactaaaa |
47798782 |
T |
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| Q |
101 |
gttgttaatttggaaatcaaaattattgaattatttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggacacataaggaagctc |
200 |
Q |
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| T |
47798781 |
gttgttaatttggaaatcaaaattattgaattatttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggacacataaggaagctc |
47798682 |
T |
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| Q |
201 |
atttcagaatctagtaatgctgttgctgatgt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
47798681 |
atttcagaatctagtaatgctgttgctgatgt |
47798650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 39777384 - 39777493
Alignment:
| Q |
123 |
ttattgaattatttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggacacataaggaagctcatttcagaatctagtaatgctg |
222 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
39777384 |
ttattgaattatttttcataactctaacgtaatttgcagtttccattaatttcaaaaagtggatacataaggaagctcatttcagaatctagtgatgctg |
39777483 |
T |
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| Q |
223 |
ttgctgatgt |
232 |
Q |
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| T |
39777484 |
ttgatgatgt |
39777493 |
T |
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