View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6972_low_15 (Length: 229)
Name: NF6972_low_15
Description: NF6972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6972_low_15 |
 | |
|
| [»] chr2 (15 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 32306823 - 32306595
Alignment:
| Q |
1 |
tcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32306823 |
tcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaactaccctaaaatgtgtatgagaaacttacataggaagagaacaaatttgctaa |
32306724 |
T |
|
| Q |
101 |
actagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306723 |
actagaatgaaatatatgaaccaactcacttaagagtttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttag |
32306624 |
T |
|
| Q |
201 |
acaatttcaacataacccttgcaaaatcc |
229 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
32306623 |
acaatttcaacataacccttgcgaaatcc |
32306595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 32310953 - 32310725
Alignment:
| Q |
1 |
tcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaa |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32310953 |
tcaaaatcaataaattctgtaacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgctaa |
32310854 |
T |
|
| Q |
101 |
actagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32310853 |
actagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcgaggttag |
32310754 |
T |
|
| Q |
201 |
acaatttcaacataacccttgcaaaatcc |
229 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
32310753 |
acaatttcaacataacccttgcgaaatcc |
32310725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 32799379 - 32799598
Alignment:
| Q |
10 |
ataaattctgtaaaagctgtaactttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatg |
109 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32799379 |
ataaattctataatagctgtcactttacatggccaaaactaccctaaaatgtgtatgagaaacttacataggaagagaacaaatttgctaaactagaatg |
32799478 |
T |
|
| Q |
110 |
aaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32799479 |
aaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttca |
32799578 |
T |
|
| Q |
210 |
acataacccttgcaaaatcc |
229 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
32799579 |
acataacccttgcgaaatcc |
32799598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 33 - 229
Target Start/End: Original strand, 32792734 - 32792930
Alignment:
| Q |
33 |
tttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcactta |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32792734 |
tttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgataaactagaatgaaatatatgaaccaactcactta |
32792833 |
T |
|
| Q |
133 |
agagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcaaaatcc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32792834 |
agagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatcc |
32792930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 32563891 - 32564095
Alignment:
| Q |
24 |
agctgtaactttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaacca |
123 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
32563891 |
agctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacattggaaaa-aacaaattttctaaaccagaatgaaatatatgaacca |
32563989 |
T |
|
| Q |
124 |
actcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgca |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32563990 |
actcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttcaagtcaaaacatcaaggttagacaatttcaacataacccttgcg |
32564089 |
T |
|
| Q |
224 |
aaatcc |
229 |
Q |
| |
|
|||||| |
|
|
| T |
32564090 |
aaatcc |
32564095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 32786342 - 32786547
Alignment:
| Q |
24 |
agctgtaactttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaacca |
123 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| |||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32786342 |
agctgtcactttacatggccaaaaccaccctaaaatatgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccg |
32786441 |
T |
|
| Q |
124 |
actcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgca |
223 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786442 |
actcacttaagagcttacaagatgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcg |
32786541 |
T |
|
| Q |
224 |
aaatcc |
229 |
Q |
| |
|
|||||| |
|
|
| T |
32786542 |
aaatcc |
32786547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 28213918 - 28214111
Alignment:
| Q |
36 |
acatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaaga |
135 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
28213918 |
acatggccaaaactaccctcaaatgtgtgtgagaaacttacataagaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaaga |
28214017 |
T |
|
| Q |
136 |
gcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcaaaatcc |
229 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
28214018 |
gcttacgacacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgcgaaatcc |
28214111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 28222366 - 28222173
Alignment:
| Q |
36 |
acatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaaga |
135 |
Q |
| |
|
||||||| ||||||||| |||||||||| | |||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
28222366 |
acatggctaaaactaccatcaaatgtgtgtaagaaacttacataggaagagaaccaatttgctaagccagaatgaaatatatgaaccaactcgcttaaga |
28222267 |
T |
|
| Q |
136 |
gcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcaaaatcc |
229 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28222266 |
gcttacgacacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatcc |
28222173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 69 - 229
Target Start/End: Original strand, 32813598 - 32813758
Alignment:
| Q |
69 |
aaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctg |
168 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813598 |
aaacttgcataggaagagaacaaattttctaaaccagaatgaattatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctg |
32813697 |
T |
|
| Q |
169 |
accttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcaaaatcc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32813698 |
accttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatcc |
32813758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 28177707 - 28177604
Alignment:
| Q |
104 |
agaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagaca |
203 |
Q |
| |
|
||||| |||||||| |||||||||| |||||| |||| || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28177707 |
agaattaaatatatcaaccaactcagttaagaacttataatttgggaacaattcagacgaacctgaccttgatttccagtcaaaacatcaagattagaca |
28177608 |
T |
|
| Q |
204 |
attt |
207 |
Q |
| |
|
|||| |
|
|
| T |
28177607 |
attt |
28177604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 28159032 - 28158913
Alignment:
| Q |
110 |
aaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttca |
209 |
Q |
| |
|
|||||||| |||||||||| |||||| |||| || ||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
28159032 |
aaatatatcaaccaactcagttaagaacttataatttcggaacaattcagacgaacctgacctttatttccagtcaaaacatcaatattagacaatttca |
28158933 |
T |
|
| Q |
210 |
acataacccttgcaaaatcc |
229 |
Q |
| |
|
||| |||||||| |||||| |
|
|
| T |
28158932 |
acaccacccttgccaaatcc |
28158913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 225
Target Start/End: Complemental strand, 28171876 - 28171757
Alignment:
| Q |
106 |
aatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaat |
205 |
Q |
| |
|
|||||||||||| ||||||| || || ||| |||| || |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28171876 |
aatgaaatatatcaaccaacgcagttcagaacttataatttgggaacaattcagatgaacctgaccttgatttccagtcaaaacatcaacattagacaat |
28171777 |
T |
|
| Q |
206 |
ttcaacataacccttgcaaa |
225 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
28171776 |
ttcaacaccacccttgcaaa |
28171757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 28161798 - 28161723
Alignment:
| Q |
147 |
gggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgc |
222 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
28161798 |
gggaacaattcagacaaacctgaccttgatttccagtcaaaacatcaatattagacaatttcaacacaatccttgc |
28161723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 28147881 - 28147825
Alignment:
| Q |
154 |
attcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaa |
210 |
Q |
| |
|
|||||||| || |||||||||| ||| |||||| ||||||| |||||||||||||| |
|
|
| T |
28147881 |
attcagaccaatctgaccttgacttcaagtcaatacatcaaaattagacaatttcaa |
28147825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32813554 - 32813602
Alignment:
| Q |
1 |
tcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaact |
49 |
Q |
| |
|
|||||||||||||||||||||| | ||| | ||||||||||||||||| |
|
|
| T |
32813554 |
tcaaaatcaataaattctgtaacatttgtcattttacatggccaaaact |
32813602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University