View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6972_low_3 (Length: 446)
Name: NF6972_low_3
Description: NF6972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6972_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 376
Target Start/End: Complemental strand, 48635519 - 48635149
Alignment:
| Q |
16 |
cacacgtacgttaacttgctatacactacattcaattccattccgtgcaactttcaccttaatatatata----------gattagtccatctcctctac |
105 |
Q |
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| T |
48635519 |
cacacgtacgttaacttcctatacactacattccattccattccgtgcaactttcaccttaatatatatatatatatatagattagtccatctcctctac |
48635420 |
T |
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| Q |
106 |
atactcgnnnnnnnnnnnnnngggtgataattggcctttgaagaacagtactagttttcaatattgattatggatgatgctaaggtccttagaaagagaa |
205 |
Q |
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| T |
48635419 |
atacttgttttttctttttttgggtgataattggcctttgaagaacagtactagttttcaatattgattatggatgatgctaaggtccttagaaagagaa |
48635320 |
T |
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| Q |
206 |
agggatttggttttagcaacaaatgcacttctttggttaaggagcaacgtgctcgtctctacatcttgcgccgctgtgccaccatgctcctctgttcgta |
305 |
Q |
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| T |
48635319 |
agggatttggttttagcaacaaatgcacttctttggttaaggaacaacgtgctcgtctctacatcttgcgccgctgtgccaccatgctcctctgttcgta |
48635220 |
T |
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| Q |
306 |
tatccaaggagatgactgaactataaaattaattacatatatatttaagtttaatgttatcatatatatat |
376 |
Q |
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| T |
48635219 |
tatccaaggagatgactgaactataaaattaattacatatatatttaagtttaatgttatcatatatatat |
48635149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 367 - 428
Target Start/End: Complemental strand, 48635130 - 48635069
Alignment:
| Q |
367 |
atatatatattctccatttctatctggttgattgtttgttcagttaggttgtatgagcttca |
428 |
Q |
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| T |
48635130 |
atatatatattctccatttctatctggttgattgtttgttcagttaggttgtatgagcttca |
48635069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 233 - 322
Target Start/End: Original strand, 8554804 - 8554893
Alignment:
| Q |
233 |
cttctttggttaaggagcaacgtgctcgtctctacatcttgcgccgctgtgccaccatgctcctctgttcgtatatccaaggagatgact |
322 |
Q |
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| T |
8554804 |
cttctttggttaaggagcaacgagctcgtctctacatcgttcgtcgttgtgccaccatgcttctttgttggtacattcaaggagaagact |
8554893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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