View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6972_low_4 (Length: 446)
Name: NF6972_low_4
Description: NF6972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6972_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Complemental strand, 38102093 - 38101671
Alignment:
| Q |
16 |
attattaacccaaagaaaacgactaatgtcaagaccaatataagaaggaacaaaaactgcagaagctaaagatgaatcatttgtcaaacattcataactt |
115 |
Q |
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| T |
38102093 |
attattaacccaaagaaaacgactaatgtcaagaccaatataagaaggaacaaaaactgcagaagctaaagatgaatcatttgtcaaacattcataactt |
38101994 |
T |
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| Q |
116 |
ttcatcctattgtgaaaaataacctccaacagaaactggtttgtagcataccaagtattgtttgggacaagaatatcattaaagttttgatttttaacct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38101993 |
ttcatcctattgtgaaaaataacctccaacagaaactggtttgtagcataccaagtattgtttgggacaagaatatccttaaagttttgatttttaacct |
38101894 |
T |
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| Q |
216 |
caggacctaaacccatgttgtccatgtacggacacatgtttggtttgtcggttcctctagttaaaaattgacaattttgaagcaaatattggttgaaacg |
315 |
Q |
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| T |
38101893 |
caggacctaaacccatgttgtccatgtacggacacatgtttggtttgtcggttcctctagttaaaaattgacaattttgaagcaaatattggttgaaacg |
38101794 |
T |
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| Q |
316 |
agaagggagattttgaatgaaaacatagcgaccagtgcatgaatctgagacaaatgtgtttggttttttgttgagtgagaaattgaggatgttgttggga |
415 |
Q |
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| T |
38101793 |
agaagggagattttgaatgaaaacatagcgaccagtgcatgaatctgagacaaatgtgtttggttttttgttgagtgagaaattgaggatgttgttgggg |
38101694 |
T |
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| Q |
416 |
gtatgaaatgtgtgagaataatc |
438 |
Q |
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| T |
38101693 |
gtttgaaatgtgtgagaataatc |
38101671 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 428
Target Start/End: Original strand, 26267064 - 26267106
Alignment:
| Q |
386 |
ttgagtgagaaattgaggatgttgttgggagtatgaaatgtgt |
428 |
Q |
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| T |
26267064 |
ttgagtgagaaattgaggatattattgggagtttgaaatgtgt |
26267106 |
T |
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