View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6972_low_7 (Length: 408)
Name: NF6972_low_7
Description: NF6972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6972_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 22 - 397
Target Start/End: Complemental strand, 15682624 - 15682249
Alignment:
| Q |
22 |
gaaggcttaaaaatctggttcaggaaggcttaaaaggttgctggtacaattattaagccaagacataaaaggaggagcttttgatgtatcatggttcatg |
121 |
Q |
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| T |
15682624 |
gaaggcttaaaaatctggttcatgaaggcttaaaaggttgctggagcaattattaagccaagacataaaaggaggagcttttgatgtatcatggttcatg |
15682525 |
T |
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| Q |
122 |
agttgaagagacaatcttggaaatgtcctccattataacttggtgatacgtaaatgttaaatctaagaaagatatcgcgatccatatatttcatgaagga |
221 |
Q |
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| T |
15682524 |
agttgcagagacaatcttgaaaatgtcctccattataacttggtgatacctaaattttaaatctaagaaagataccgcgatccatatatttcatgaagga |
15682425 |
T |
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| Q |
222 |
actcatcaacaataggagtagggaacttatcatgtttagtaaattagtaacaaattaagtcatttttatgatggataggatattgattgtatgtacaagt |
321 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
15682424 |
actcatcaacaataggagtatggaacttatcatgtttagtaaattagtaacaaattaagtcatttttatgatggataggatattgattgtatgtacatgc |
15682325 |
T |
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| Q |
322 |
ggagcagcttctggaacgaattaaaatttcataaatttataatacagtgcttactgtagtggggtgtgcgtgtgtg |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||| |
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| T |
15682324 |
ggagcagcttctggaacgaattaaaatttcataaatttataatacagtgtttactgtcgtggggtgtgtgtgtgtg |
15682249 |
T |
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