View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6972_low_8 (Length: 296)
Name: NF6972_low_8
Description: NF6972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6972_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 47862511 - 47862245
Alignment:
| Q |
8 |
cgaagaatataaaaaaccatgggccccacacgtgtcaacctctcttccttatttcactgatcttacgaacaaaagaagtgttccaattctcacataaacc |
107 |
Q |
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| T |
47862511 |
cgaagaaaataaaaaaccatgggccccacacgtgtcaacctctcttccttatttcactgatcttacgaacaaaagaagtgttccaattctcacataaacc |
47862412 |
T |
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| Q |
108 |
tctctcgcgtcactttctcttgaaccagacacgtgtaaataactagcatgaatgtgtcagaataatagggtacacaaaacattagtgttgtataactgaa |
207 |
Q |
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| T |
47862411 |
tctctcgcgtcactttctcttgaaccagacacgtgtaaacaactagcatgaatgtgtcagaataataaggtacacaaaacattagtgttgtataactgaa |
47862312 |
T |
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| Q |
208 |
tgaaatctcactcaacgttcataatatgcgtc-aagattaaaccagccatatgcttttgttcccctt |
273 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47862311 |
tgaaatctcactcaacgttcataatatgcgtcaaagattaaaccagccatatgcttttgttcccctt |
47862245 |
T |
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