View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_high_1 (Length: 1108)
Name: NF6973_high_1
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 464 - 1096
Target Start/End: Original strand, 53596923 - 53597565
Alignment:
| Q |
464 |
aaacccaaccatcaaatcactata----taccaaataatcaaaccaaattcagattgaagtaacagatgaattggtgtttccaccctcttaccatccata |
559 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53596923 |
aaacccaaccatcagatcactatatatataccaaataatcaaaccaaattcacattgaagaaacagatgaattggtgtttccaccctcttaccatccata |
53597022 |
T |
|
| Q |
560 |
ataactcaagtaatatacatgtttgtgaaattcacattctctgttaccagaatatacataactgcata--caag----tacatacaaatcaacacacaaa |
653 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| |
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| T |
53597023 |
ataactcaagtaatatacatgtttgtgaaattcacattctctgttaccagaatatacataactggatacgcaagtacatacatacaaatcaacacacaaa |
53597122 |
T |
|
| Q |
654 |
ttggcatatatatcctctcttgtttactttgacttattgtcccaaacactaatcagatatcaaaggcaatttaataactattcacaaatctcaaccatac |
753 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||| |
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| T |
53597123 |
ttggcatatataccctctcttgtttactttgacttattgtcccaaacactaatcagatatcaaatgcaatttaataactattcacaagtcacaaccatac |
53597222 |
T |
|
| Q |
754 |
acatttgctcaatttataccaacatacaatatactcatattgctagtttaaaaggactaaagaactgaattcacactaccatatataaccaatatacata |
853 |
Q |
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| T |
53597223 |
acattcgctcaatttataccaacatacaatatactcatattgctagtttaaaaggactaaataactgaattcacactaccatatataaccaatatacata |
53597322 |
T |
|
| Q |
854 |
cttatatgattaattaaattaatatggtcgttctccaacataattaccaacaggatcatagttacaagtcatgaacacatctccatcatcacacacaact |
953 |
Q |
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| T |
53597323 |
cttatatgattaattaaattaatatggtcgttctccaacataattaccaacaggatcatagttacaagtcatgaacacatctccatcatcacacacaact |
53597422 |
T |
|
| Q |
954 |
cttgcacaaccaattcttctagtacttttccacacaatctgagtataatgtccacacatttgaccagatacacatgaattagtcacatatgtgtaatatt |
1053 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53597423 |
cttgcacaaccaattcttctagtacttttccacacaatctgagtataatgtccacacatttgaccagatacacatgaattagtcacatatgtgtaatatt |
53597522 |
T |
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| Q |
1054 |
tctcttcatcagcccaagcttttacagcatccgttgatgtcca |
1096 |
Q |
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| T |
53597523 |
tctcttcatcagcccaagcttttacagcatccgttggtgtcca |
53597565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 240 - 458
Target Start/End: Original strand, 53596673 - 53596891
Alignment:
| Q |
240 |
atatcatgacaaaggtcctaaatccattcataaaaaagggaatttttcacgagagttctttaaattcatcaaacactttcataagatcatgcaccttatt |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53596673 |
atatcatgacaaaggtcctaaatccattcataaaaaagggaatttttcacgatagttctttaaattcatcaaacactttcataagatcatgcaccttatt |
53596772 |
T |
|
| Q |
340 |
ctagaaaatgaagtcattcattgttttcctaagaagccacaacgttgtattctaaatcaacgaaaccaccttccttaatttttcgtaaaggttagcccac |
439 |
Q |
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| T |
53596773 |
ctagaaaatgaagtcattcattgttttcctaagaagccacaacgttgtattctaaatcaacgaaaccaccttccttaatttttcgtaaaggttagcccac |
53596872 |
T |
|
| Q |
440 |
ttaagcattcaaacaatgt |
458 |
Q |
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| T |
53596873 |
ttaagcattcaaacaatgt |
53596891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 9e-70
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 53596449 - 53596587
Alignment:
| Q |
18 |
catatagcctcgactatctatcctcgaagagaaatgatatccgaacgtatcaaactaataaaacgacctgagggatgtttaaacatcagacctgcaaaat |
117 |
Q |
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| T |
53596449 |
catatagcctcgactatctatcctcgaagagaaatgatatccgaacgtatcaaactaataaaacgacctgagggatgtttaaacatcagacctgcaaaat |
53596548 |
T |
|
| Q |
118 |
catgcagcggaccaaaagcaaaactgttgtgaagtctcc |
156 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
53596549 |
catgcagcggaccaaaagcaaaactgttgtgaaggctcc |
53596587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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