View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_high_11 (Length: 542)
Name: NF6973_high_11
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 96 - 520
Target Start/End: Complemental strand, 8258165 - 8257740
Alignment:
| Q |
96 |
ttcatcaatattcttgatttgaaaatcactagccacgcgttcatttacctcaactttcttgatttttaaaacactagc-atgtgtctatttaactcaacc |
194 |
Q |
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| T |
8258165 |
ttcatcaatattcttgatttgaaaatcactagtcatgcgctcatttacatcaactttcttgatttttaaaacaatagccacatgtctatttaactcaacc |
8258066 |
T |
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| Q |
195 |
aattatattatgtcaaatatatttccaatatatgcaattttaaatcgtaatatctaacacataatcatcgttttcgcgggacattactattgttctgtca |
294 |
Q |
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|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8258065 |
aaatatattatgtcaaatgtatttccaatatatgcaattttaaatcgtaatatctaaaacataatcatcgttttcgcgggacattactattgttctatca |
8257966 |
T |
|
| Q |
295 |
acataaagcatagaaaagaaagnnnnnnnngaatacattaaaggggtcaaataccatgtctgaaaatgcatgtcagcccccaagagaggatcgtgattct |
394 |
Q |
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| T |
8257965 |
acataaaacatagaaaagaaagaaaaaaaagaatacattaaaggagtcaaataccatgtatgaaaatgtatgtcagcccccaagagaggatcgtgattat |
8257866 |
T |
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| Q |
395 |
aaacacacccctttcttatattcccatctattatctatccttttctaagatgtttgtcaaaagtgtggtggtcatgttacatcaaagtttcatggtgtgg |
494 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8257865 |
aaactcatccctttcttatattcccatctattatctatccttttctaagatgtttgtcaaaagtgtgatggtcatgttacatcaaagtttcatggtgtgg |
8257766 |
T |
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| Q |
495 |
tggaaattggctgaacatgaaagttt |
520 |
Q |
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| T |
8257765 |
tggaaattggctgaacaagaaagttt |
8257740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 8258287 - 8258223
Alignment:
| Q |
19 |
gataaccccaaataaacttgatgtttcttaatacatagtaaaggagaaaggaaaatatagaagttt |
84 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8258287 |
gataaccccaaataaacttgatgtt-cttaatacatagtaaaggagaaaggaaaatatagaagttt |
8258223 |
T |
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