View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_high_13 (Length: 528)
Name: NF6973_high_13
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_13 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: scaffold0212 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Original strand, 11996 - 12497
Alignment:
| Q |
18 |
atcaaaaccgactgcctggatacagaccagattttgtccatgattattaaggtaaccagataagctccaggtttagttgtagttccgcggatagaggagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11996 |
atcaaaaccgactgcctggatacagaccagattttgtccatgattattaaggtaaccagataagctccaggtttagttgtagttccgcggatagaggagc |
12095 |
T |
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| Q |
118 |
tgcttcgagcattggtatgaaacccggaatattttatttgaaatcgcgatgagttaaagaaacccacccggaattcagtccatgataggatagggaaaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12096 |
tgcttcgagcattggtatgaaacccggaatattttatttgaaatcgcgatgagttaaagaaacccacccggaattcagtccatgataggatagggaaaga |
12195 |
T |
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| Q |
218 |
agcttgtgcatctttctattttatgtttgttgatggatctatcaaagtggtatcggagattttttcttaatggaaacttgtataggcccctatggctctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12196 |
agcttgtgcatctttctattttatgtttgttgatggatctatcaaagtggtatcggagattttttcttaatggaaacttgtataggcccctatggctctc |
12295 |
T |
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| Q |
318 |
ctaaaacccttcataagggatatggctataatgagaatatcttgctttccgcacccgctagtgcacatacactttcgtttacttgggctcgtgaggtggt |
417 |
Q |
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| T |
12296 |
ctaaaacccttcataagggatatggctataatgagaatatcttgctttccgcacccgctagtgcacatacactttcgtttacttgggctcgtgaggtggt |
12395 |
T |
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| Q |
418 |
gggaaatggcctgatctatgcttatgctcttgtctaaggagtccgcagactcttattagactgcttgtgcctatgtctcgcgaaatccatgatgtccatc |
517 |
Q |
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| T |
12396 |
gggaaatggcctgatctatgcttatgctcttgtctaaggagtccgcagactcttattagactgcttgtgcctatgtctcgcgaaatccatgatgttcatc |
12495 |
T |
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| Q |
518 |
tc |
519 |
Q |
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|| |
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| T |
12496 |
tc |
12497 |
T |
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Back To:
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Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 61 - 260
Target Start/End: Original strand, 16576868 - 16577067
Alignment:
| Q |
61 |
ttattaaggtaaccagataagctccaggtttagttgtagttccgcggatagaggagctgcttcgagcattggtatgaaacccggaatattttatttgaaa |
160 |
Q |
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| T |
16576868 |
ttattaaggttatcagataagctccaggtttagttgtagtttcgtggatagaggagttgcttcgagtattggtatgaaacccgaaatattttatttgaaa |
16576967 |
T |
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| Q |
161 |
tcgcgatgagttaaagaaacccacccggaattcagtccatgataggatagggaaagaagcttgtgcatctttctattttatgtttgttgatggatctatc |
260 |
Q |
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||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
16576968 |
tcgtgatgagttaaagaaatcaacccgaaattcagtccatgataggatagggaaagaagcttgtgcatctttctattttacaattgatgatggatctatc |
16577067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 9628897 - 9628815
Alignment:
| Q |
18 |
atcaaaaccgactgcctggatacagaccagattttgtccatgattattaaggtaaccagataagctccaggtttagttgtagt |
100 |
Q |
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| T |
9628897 |
atcaaaaccgactgcctagatatagagcagattttgtccatgattattaaggtaactagataagctccaggtttagttgtagt |
9628815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 512
Target Start/End: Original strand, 21805420 - 21805468
Alignment:
| Q |
464 |
agactcttattagactgcttgtgcctatgtctcgcgaaatccatgatgt |
512 |
Q |
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| T |
21805420 |
agactcttattagaatgtttgtgcctatgtcttgcgaaatccataatgt |
21805468 |
T |
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