View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6973_high_16 (Length: 453)

Name: NF6973_high_16
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6973_high_16
NF6973_high_16
[»] chr8 (1 HSPs)
chr8 (11-443)||(64077-64509)
[»] chr4 (2 HSPs)
chr4 (11-393)||(51166116-51166504)
chr4 (11-441)||(16080441-16080871)
[»] chr3 (1 HSPs)
chr3 (11-441)||(48772543-48772973)
[»] chr1 (1 HSPs)
chr1 (11-420)||(44885537-44885940)
[»] chr6 (5 HSPs)
chr6 (11-101)||(19329381-19329471)
chr6 (339-443)||(19329211-19329315)
chr6 (13-101)||(8832443-8832531)
chr6 (13-101)||(8835728-8835816)
chr6 (13-101)||(26718335-26718423)


Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 443
Target Start/End: Complemental strand, 64509 - 64077
Alignment:
Q  11 acatcaccaaaatatttgtaagccattctagaccttgaatcaacccaaaagcaatttgctaatttaccttctgcgtccatttgaaatgcatnnnnnnncc 110  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  64509 acatcaccaaaatatttgtaagccattctagacattgaatcaacccaaaagcaatttgctaatttaccttctgcgtccatttgaaatgcataaaaaa-cc 64411  T
Q  111 caggattcttcaactgacaattcttaaagtacgataacatcaagtgagcatctccattttctaattgtttttgtctctttacacttaaataattaataac 210  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  64410 caggattcttcaactaacaattcttaaagtacgataacatcaagtgagcatctccattttctaattgtttttgtctctttacacttaaataattaataac 64311  T
Q  211 atcttgttggctaaatccaacattatcaacaccaccactctcggtacataacactgatgctattttactagggcctataccagaatcatgaagcacatca 310  Q
    |||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  64310 atcttgttggctaaatccaacattctcaacaccgccactctcagtacataacactgatgctattttactagggcctataccagaatcatgaagcacatca 64211  T
Q  311 ataag-nnnnnnnngcactgggattttctttctatgtactcgaagatgttgtgaacttcttggggaaaatactacatgattatggtctcttacaaatcta 409  Q
    |||||         |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  64210 ataagtttttttttgcactggggttttctttctatgtactcgaagatgttgtgaacttcttcgggaaaatagtacatgattatggtctcttacaaatcta 64111  T
Q  410 gaaacaatccacccatcttcatttttcttgatgt 443  Q
    ||||||||||||||||||||||||||||||||||    
T  64110 gaaacaatccacccatcttcatttttcttgatgt 64077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 51166504 - 51166116
Alignment:
Q  11 acatcaccaaaatatttgtaagccattctagaccttgaatcaacccaaaagcaatttgctaatttaccttctgcgtccatttgaaatgcatnnnnnnncc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |    
T  51166504 acatcaccaaaatatttgtaagccattctagaccttgaatcaacccaaaagcaatttgctaatttaccttctgcgtccatttgaaatgcataaaaaaaac 51166405  T
Q  111 caggattcttcaactgacaattcttaaagtacgataacatcaagtgagcatctccattttctaattgtttttgtctctttacacttaaataattaataac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51166404 caggattcttcaactgacaattcttaaagtacgataacatcaagtgagcatctccattttctaattgtttttgtctctttacacttaaataattaataac 51166305  T
Q  211 atcttgttggctaaatccaacattatcaacaccaccactctcggtacataacactgatgctattttactagggcctataccagaatcatgaagcacatca 310  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51166304 atcttgttggctaaatccaacattatcaacaccaccactctcagtacataacactgatgctattttactagggcctataccagaatcatgaagcacatca 51166205  T
Q  311 ataag------nnnnnnnngcactgggattttctttctatgtactcgaagatgttgtgaacttcttggggaaaatactacatgattatg 393  Q
    |||||              |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51166204 ataagttttttttttttttgcactggggttttctttctatgtactcgaagatgttgtgaacttcttggggaaaatagtacatgattatg 51166116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 16080871 - 16080441
Alignment:
Q  11 acatcaccaaaatatttgtaagccattctagaccttgaatcaacccaaaagcaatttgctaatttaccttctgcgtccatttgaaatgcatnnnnnnncc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  16080871 acatcaccaaaatatttgtaagccattctagaccttgaatcaacccaaaagcaatttgctaatttaccttctgcgtccatttgaaatgcatagaaaaacc 16080772  T
Q  111 caggattcttcaactgacaattcttaaagtacgataacatcaagtgagcatctccattttctaattgtttttgtctctttacacttaaataattaataac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  16080771 caggattcttcaactgacaattcttaaagtacgataacatcatctgagcatctccattttctaattgtttttgtctcttcacagttaaataattaataac 16080672  T
Q  211 atcttgttggctaaatccaacattatcaacaccaccactctcggtacataacactgatgctattttactagggcctataccagaatcatgaagcacatca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16080671 atcttgttggctaaatccaacattatcaacaccaccactctctttacataacactgatgctattttactagggcctataccagaatcatcaagcacatca 16080572  T
Q  311 ataagnnnnnnnngcactgggattttctttctatgtactcgaagatgttgtgaacttcttggggaaaatactacatgattatggtctcttacaaatctag 410  Q
    |||||        |||||  | ||||  |||||||||||| ||||   ||||||||  |||||||||||| | |||||||||||||||||||||||||||    
T  16080571 ataagttttttttgcactttggttttgcttctatgtactctaagaaagtgtgaactgtttggggaaaatagttcatgattatggtctcttacaaatctag 16080472  T
Q  411 aaacaatccacccatcttcatttttcttgat 441  Q
    ||||| |||||| ||||||| ||||||||||    
T  16080471 aaacagtccacctatcttcacttttcttgat 16080441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 48772973 - 48772543
Alignment:
Q  11 acatcaccaaaatatttgtaagccattctagaccttgaatcaacccaaaagcaatttgctaatttaccttctgcgtccatttgaaatgcatnnnnnnncc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       ||    
T  48772973 acatcaccaaaatatttgtaagccattctagaccttgaatcaacccaaaagtaatttgctaatttaccttctgcgtccatttgaaatgcatagaaaaacc 48772874  T
Q  111 caggattcttcaactgacaattcttaaagtacgataacatcaagtgagcatctccattttctaattgtttttgtctctttacacttaaataattaataac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  48772873 caggattcttcaactgacaattcttaaagtacgataacatcaactgagcatctccattttctaattgtttttgtctcttcacagttaaataattaataac 48772774  T
Q  211 atcttgttggctaaatccaacattatcaacaccaccactctcggtacataacactgatgctattttactagggcctataccagaatcatgaagcacatca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48772773 atcttgttggctaaatccaacattatcaacaccaccactctcgatacataacactgatgctattttactagggcctataccagaatcatcaagcacatca 48772674  T
Q  311 ataagnnnnnnnngcactgggattttctttctatgtactcgaagatgttgtgaacttcttggggaaaatactacatgattatggtctcttacaaatctag 410  Q
    |||||        |||||  | ||||  |||||||||||| ||||   ||||||||  || ||||||||| | |||||||||||||||| |||||||||     
T  48772673 ataagttttttttgcactttggttttgcttctatgtactctaagaaactgtgaactgtttagggaaaatagttcatgattatggtctctaacaaatctaa 48772574  T
Q  411 aaacaatccacccatcttcatttttcttgat 441  Q
    |||||||||||| ||||||| ||||||||||    
T  48772573 aaacaatccacctatcttcacttttcttgat 48772543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 420
Target Start/End: Original strand, 44885537 - 44885940
Alignment:
Q  11 acatcaccaaaatatttgtaagccattctagaccttgaatcaacccaaaagcaatttgctaatttaccttctgcgtccatttgaaatgcatnnnnnnncc 110  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | |||||| ||||| || ||||||||||| ||||       ||    
T  44885537 acatcaccaaaatatttgtaagcaactctagaccttgaatcaacccaaaagcaattagttaattttccttcggcatccatttgaaacgcatagaaaaacc 44885636  T
Q  111 caggattcttcaactgacaattcttaaagtacgataacatcaagtgagcatctccattttctaattgtttttgtctctttacacttaaataattaataac 210  Q
    ||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||  ||||| |||||||||||||||| ||||||||| ||||| |||||    
T  44885637 cagtattcttcaactgacaattcttaaagtatgataacatcaattgagcatctctgttttcaaattgtttttgtctctgtacacttaagtaattgataac 44885736  T
Q  211 atcttgttggctaaatccaacattatcaacaccaccactctcggtacataacactgatgctattttactagggcctataccagaatcatgaagcacatca 310  Q
    ||||||||| ||| |||||| |||||||| ||| ||||| || || ||||| |  |||| | ||||      ||||| |||||| |||| ||||||||||    
T  44885737 atcttgttgactagatccaaaattatcaataccgccactttcagtgcataagatagatgttgtttt------gcctaaaccagattcatcaagcacatca 44885830  T
Q  311 ataagnnnnnnnngcactgggattttctttctatgtactcgaagatgttgtgaacttcttggggaaaatactacatgattatggtctcttacaaatctag 410  Q
     ||||        |||||    |||||||||||||||| ||||||   |||| |||||| || ||||| |     ||||||||||| |||||||||||||    
T  44885831 gtaagtgtcttttgcactttagttttctttctatgtacgcgaagagactgtgcacttctaggagaaaacagctggtgattatggtcgcttacaaatctag 44885930  T
Q  411 aaacaatcca 420  Q
    ||||||||||    
T  44885931 aaacaatcca 44885940  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 19329471 - 19329381
Alignment:
Q  11 acatcaccaaaatatttgtaagccattctagaccttgaatcaacccaaaagcaatttgctaatttaccttctgcgtccatttgaaatgcat 101  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||  ||||| | ||||||||||||||||    
T  19329471 acatcaccaaaatatttgtaagccattttagatcttgaatcaacccaaaagtaatttgctaattttgcttctacatccatttgaaatgcat 19329381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 339 - 443
Target Start/End: Complemental strand, 19329315 - 19329211
Alignment:
Q  339 ttctatgtactcgaagatgttgtgaacttcttggggaaaatactacatgattatggtctcttacaaatctagaaacaatccacccatcttcatttttctt 438  Q
    ||||||| |||||||||   |||||| || |||||||||||| | ||||||| | ||||||| |||||||||||| | |||||| |||||||||||||||    
T  19329315 ttctatgcactcgaagaaaatgtgaaattattggggaaaatagttcatgattgttgtctctttcaaatctagaaatagtccacctatcttcatttttctt 19329216  T
Q  439 gatgt 443  Q
    |||||    
T  19329215 gatgt 19329211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 8832443 - 8832531
Alignment:
Q  13 atcaccaaaatatttgtaagccattctagaccttgaatcaacccaaaagcaatttgctaatttaccttctgcgtccatttgaaatgcat 101  Q
    |||| |||||||||||||| || || ||||||||||  ||||||| ||||||||| |||||||  |||||   ||||||||||||||||    
T  8832443 atcatcaaaatatttgtaaaccgttttagaccttgacacaacccataagcaatttactaattttacttctatatccatttgaaatgcat 8832531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 8835728 - 8835816
Alignment:
Q  13 atcaccaaaatatttgtaagccattctagaccttgaatcaacccaaaagcaatttgctaatttaccttctgcgtccatttgaaatgcat 101  Q
    |||| ||||||||||||||  |||| |||||||| |  ||||||| ||||||||| |||||||  ||||||  ||||||||||||||||    
T  8835728 atcatcaaaatatttgtaaatcattttagaccttaacacaacccataagcaatttactaattttacttctgtatccatttgaaatgcat 8835816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 26718335 - 26718423
Alignment:
Q  13 atcaccaaaatatttgtaagccattctagaccttgaatcaacccaaaagcaatttgctaatttaccttctgcgtccatttgaaatgcat 101  Q
    ||||||| ||||| |||||||| ||||| ||||||||||||||||||| || |||| ||| | ||||||| | |||||||  |||||||    
T  26718335 atcaccataatatatgtaagcccttctaaaccttgaatcaacccaaaaacagtttgataagtgaccttctacatccatttagaatgcat 26718423  T

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