View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6973_high_17 (Length: 437)

Name: NF6973_high_17
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6973_high_17
NF6973_high_17
[»] chr6 (4 HSPs)
chr6 (1-105)||(17605141-17605243)
chr6 (1-105)||(17576524-17576626)
chr6 (3-101)||(21628933-21629029)
chr6 (36-97)||(15955798-15955859)
[»] chr3 (3 HSPs)
chr3 (1-105)||(12333895-12333997)
chr3 (13-105)||(19891919-19892009)
chr3 (34-94)||(32518348-32518408)
[»] chr8 (2 HSPs)
chr8 (1-105)||(20825531-20825633)
chr8 (207-275)||(16361610-16361677)
[»] chr5 (4 HSPs)
chr5 (1-105)||(25856246-25856348)
chr5 (1-73)||(33384812-33384882)
chr5 (59-103)||(12833188-12833232)
chr5 (59-103)||(12865166-12865210)
[»] chr4 (3 HSPs)
chr4 (205-301)||(26826396-26826498)
chr4 (299-335)||(26827307-26827343)
chr4 (59-103)||(20508780-20508824)
[»] chr2 (1 HSPs)
chr2 (34-94)||(33410924-33410984)
[»] scaffold1350 (1 HSPs)
scaffold1350 (2-103)||(776-875)
[»] scaffold0031 (1 HSPs)
scaffold0031 (55-100)||(67738-67783)


Alignment Details
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 17605243 - 17605141
Alignment:
Q  1 ggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaacaagaa 100  Q
    ||||||| ||| |||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17605243 ggattagcgcctcccacactgtaacccgtaaagacat--ttgcttcaaccatggctttcatcaacacatttaacccttctgcagctaacaaaaacaagaa 17605146  T
Q  101 aggag 105  Q
    |||||    
T  17605145 aggag 17605141  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 17576626 - 17576524
Alignment:
Q  1 ggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaacaagaa 100  Q
    |||||||||||||||||||||||||||||||||||||  | ||||||||||||  | |||||||||||||||||||||| ||||||||||||||||| ||    
T  17576626 ggattagtgccacccacactgtaacccgtaaagacat--tggcttcaaccatggatgtcatcaacacatttaacccttcagcagctaacaaaaacaaaaa 17576529  T
Q  101 aggag 105  Q
    |||||    
T  17576528 aggag 17576524  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 21629029 - 21628933
Alignment:
Q  3 attagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaacaagaaa 101  Q
    ||||| ||| |||||||||||||||||||||||||  |||||||||||||  |||||||||| | ||||||||||||||||||||||||||||||||||    
T  21629029 attagcgcctcccacactgtaacccgtaaagacat--ttgcttcaaccatagctttcatcaagatatttaacccttctgcagctaacaaaaacaagaaa 21628933  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 15955859 - 15955798
Alignment:
Q  36 atatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaacaa 97  Q
    |||||||||||||||||   ||||||||| ||||| ||||||||| | ||||| ||||||||    
T  15955859 atatttgcttcaaccattgttttcatcaaaacattcaacccttctactgctaataaaaacaa 15955798  T

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Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 12333997 - 12333895
Alignment:
Q  1 ggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaacaagaa 100  Q
    ||||||| ||| |||||||||||||||||||||||||  || ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  12333997 ggattagcgcctcccacactgtaacccgtaaagacat--ttccttcaaccatggctttcatcaacacatttaacccttctgcagctaacagaaacaagaa 12333900  T
Q  101 aggag 105  Q
    |||||    
T  12333899 aggag 12333895  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 19891919 - 19892009
Alignment:
Q  13 cccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaacaagaaaggag 105  Q
    ||||| ||||| |||||||||||||  |||||||||||| | ||||||||| |||||| || |||||||| ||||||||||||||||||||||    
T  19891919 cccactctgtatcccgtaaagacat--ttgcttcaaccaaggctttcatcaccacattcaaaccttctgctgctaacaaaaacaagaaaggag 19892009  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 32518348 - 32518408
Alignment:
Q  34 acatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaa 94  Q
    |||||||||| |||||||    ||||||||||||||| |||||||||||||| ||||||||    
T  32518348 acatatttgcatcaaccacagatttcatcaacacattgaacccttctgcagccaacaaaaa 32518408  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 20825531 - 20825633
Alignment:
Q  1 ggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaacaagaa 100  Q
    |||||||||||||||||||||||||||||||||||||  | ||||||||||||  | |||||||||||||||||||||| ||||||||||||||||| ||    
T  20825531 ggattagtgccacccacactgtaacccgtaaagacat--tggcttcaaccatggatgtcatcaacacatttaacccttcagcagctaacaaaaacaaaaa 20825628  T
Q  101 aggag 105  Q
    |||||    
T  20825629 aggag 20825633  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 16361610 - 16361677
Alignment:
Q  207 tattaattgtccttgcggtgatcctatggtttccaatttcttagtagtttttattttaatttataaaat 275  Q
    |||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  16361610 tattaattgtgctt-cggttatcctatgatttccaatttcttagtagtttttattttattttataaaat 16361677  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 25856348 - 25856246
Alignment:
Q  1 ggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaacaagaa 100  Q
    |||||||||||||||||||||||||||||||||||||  | ||||||||||||  | |||||||||||||||||||||| ||||||||||||||||| ||    
T  25856348 ggattagtgccacccacactgtaacccgtaaagacat--tggcttcaaccatggatgtcatcaacacatttaacccttcagcagctaacaaaaacaaaaa 25856251  T
Q  101 aggag 105  Q
    |||||    
T  25856250 aggag 25856246  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33384882 - 33384812
Alignment:
Q  1 ggattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaa 73  Q
    ||||||| ||| |||||||||||||| |||||||||   |||||||||||||| |||||||||||||||||||    
T  33384882 ggattagcgcctcccacactgtaacctgtaaagacac--ttgcttcaaccatggctttcatcaacacatttaa 33384812  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 12833188 - 12833232
Alignment:
Q  59 catcaacacatttaacccttctgcagctaacaaaaacaagaaagg 103  Q
    |||||||||||  |||||||| ||||||| |||||||||||||||    
T  12833188 catcaacacatgaaacccttccgcagctagcaaaaacaagaaagg 12833232  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 12865166 - 12865210
Alignment:
Q  59 catcaacacatttaacccttctgcagctaacaaaaacaagaaagg 103  Q
    |||||||||||  |||||||| ||||||| |||||||||||||||    
T  12865166 catcaacacatgaaacccttccgcagctagcaaaaacaagaaagg 12865210  T

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Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 205 - 301
Target Start/End: Original strand, 26826396 - 26826498
Alignment:
Q  205 tatattaattgtccttgcggtgatcct------atggtttccaatttcttagtagtttttattttaatttataaaatgcacttttgttcagtttaatggt 298  Q
    |||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||| ||||||    
T  26826396 tatattaattgtccttgcggtgatcctattcctatggtttccaatttcttagtagtttttattttaatctataaacagcacttttgttcagttaaatggt 26826495  T
Q  299 cta 301  Q
    |||    
T  26826496 cta 26826498  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 26827307 - 26827343
Alignment:
Q  299 ctaatgagtttgttacttggtttggcaaggggcacac 335  Q
    |||||||||||||||||||||||||||||||||||||    
T  26827307 ctaatgagtttgttacttggtttggcaaggggcacac 26827343  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 20508824 - 20508780
Alignment:
Q  59 catcaacacatttaacccttctgcagctaacaaaaacaagaaagg 103  Q
    |||||||||||  |||||||| ||||||| |||||||||||||||    
T  20508824 catcaacacatgaaacccttccgcagctagcaaaaacaagaaagg 20508780  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 33410984 - 33410924
Alignment:
Q  34 acatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaa 94  Q
    ||||||| || |||||||  ||||||||||||||||| || ||||||||||| ||||||||    
T  33410984 acatattagcatcaaccaccactttcatcaacacattgaaaccttctgcagccaacaaaaa 33410924  T

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Target: scaffold1350 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 776 - 875
Alignment:
Q  2 gattagtgccacccacactgtaacccgtaaagacatatttgcttcaaccatgactttcatcaacacatttaacccttctgcagctaacaaaaacaagaaa 101  Q
    |||||| ||| |||||  |||| ||||||||||  |||||||||| |||| | ||| |||||||||||| |  |||| ||| |||||||||||||| |||    
T  776 gattagcgccccccaccttgtatcccgtaaaga--tatttgcttccaccaaggcttgcatcaacacattgagtccttatgctgctaacaaaaacaaaaaa 873  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 67738 - 67783
Alignment:
Q  55 ctttcatcaacacatttaacccttctgcagctaacaaaaacaagaa 100  Q
    |||||||||||||||| |||||||| ||||| || |||||||||||    
T  67738 ctttcatcaacacattcaacccttcagcagccaataaaaacaagaa 67783  T

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