View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_high_18 (Length: 434)
Name: NF6973_high_18
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 420
Target Start/End: Original strand, 36917734 - 36918134
Alignment:
| Q |
20 |
caaatatcttattgaacacaatttttagtgaatgtattcaaacgtaaatcaatttttaacacattattagttgaagtcaattttatataatcaattcatt |
119 |
Q |
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| T |
36917734 |
caaatctcttgttgaacacaattttcagtgaatgtattcaaacgtaaatcaatttttaacacattattagttgaagtcgattttatataatcaattcatt |
36917833 |
T |
|
| Q |
120 |
caaatttaaattttattaacgtaaacatgtaatttttatggaagtatttgtgaattcaccgtgatattaaacatgcacttcctcactttagaaagacttt |
219 |
Q |
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| T |
36917834 |
caaatttaaattttattaacgtaaacatgtaatttttatgaaagtatttgtgaattcaccgtgatactaaccatgcacttcctcactctagaaagacttt |
36917933 |
T |
|
| Q |
220 |
tgaatgaagggtgaacgttcacaggtcaacttgttagcatgagggatacttcatacttttctaagtctttgttgcttcttagttgtagtaatagaaattc |
319 |
Q |
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| T |
36917934 |
tgaatgaagggtcaacgttcacaggtcaacttgttagcatgtgggatacttcatacttttctaagtctttgttgcttcttagttgtagtaatagaaattc |
36918033 |
T |
|
| Q |
320 |
aggttggaaattggaacacccttcaaattagtaccaagcttgtgctgagagtctacaaaacaaggtaattgtaacaccnnnnnnncttttcatcatgatg |
419 |
Q |
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| T |
36918034 |
aggttggaaattggaacacccttcaaattagtaccaagcttgtgctgaaagtctacaaaacaaggtaattgtaacacctttttttcttttcatcatgatg |
36918133 |
T |
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| Q |
420 |
t |
420 |
Q |
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| T |
36918134 |
t |
36918134 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 50419163 - 50419126
Alignment:
| Q |
96 |
tcaattttatataatcaattcattcaaatttaaatttt |
133 |
Q |
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| T |
50419163 |
tcaattttacataatcaattcattcaaaattaaatttt |
50419126 |
T |
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