View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_high_24 (Length: 392)
Name: NF6973_high_24
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 380
Target Start/End: Complemental strand, 51729516 - 51729154
Alignment:
| Q |
20 |
ttgagaaactattttctgtatcatcaatcttccatgctccataaatactgctttggtccagatcaggagctgcagaaccaaaaaattctacctcagatgt |
119 |
Q |
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| T |
51729516 |
ttgagaaactattttctgtatcatcaatcttccatgctccataaatactgctttggtccagatcaggagctgcagaaccaaaaaattctacctcagatgt |
51729417 |
T |
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| Q |
120 |
aaattttgcatgagaaaagtttcactgagaaatctcagttgaagaaaattgaatatgcacaaactaaagaaaaagagagaaagattac--acaatagtgt |
217 |
Q |
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| T |
51729416 |
aaattttgcatgagaaaagcttcactgagaaatctcagttgaagaaaattgaatatccacaaactaaagaaaaagagagaaagattacagacaatagtgt |
51729317 |
T |
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| Q |
218 |
caaaagtaatcaaagaagaattccacatttccatacatagatatgaaacatactttggaagcacgnnnnnnntcctgatttacagcataactctcatttc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51729316 |
caaaagtaatcaaagaagaattccacatttccatacatagatatgaaacatactttggaagcacgaaaaaaatcctgatttacagcataactctcatttc |
51729217 |
T |
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| Q |
318 |
tttttcgacaactttgggcctcaagtttcaactttcaccacccagtgagcatacctaggttca |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729216 |
tttttcgacaactttgggcctcaagtttcaactttcaccacccagtgagcatacctaggttca |
51729154 |
T |
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