View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_high_29 (Length: 364)
Name: NF6973_high_29
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 14703203 - 14703553
Alignment:
| Q |
1 |
caaattaaccgacacttttaaaaatagctgattcttatatccataggatgaaaacaaatttaccgacacttttttgcnnnnnnnnnnnnnnnnntaacnn |
100 |
Q |
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| T |
14703203 |
caaattaaccgacacttttaaaaatagctgattcttatatctataggatgaaaacaaatttaccgacacttttttgcaaaaaaaataaaaaaa-taactt |
14703301 |
T |
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| Q |
101 |
nnnnnaataagcaaaaagaataaccaacattcttcatttataataaaataaacatttacaattttttcactgtagtattatagtatattcgaatcataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14703302 |
tttttaataagcaaaaagaataaccaacattcttcatttataataaaataaacatttacaaatttttcactgtagtattatagtatattcgaatcataaa |
14703401 |
T |
|
| Q |
201 |
accttattctatggtcactgtacttacctttccttaaggcaaaaaagatcacgagatttcccnnnnnnnccaaaagctatttattacttttctatttttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14703402 |
accttattctatggtcactgtacttacctttccttaaggcaaaaaagatcacgagatttcccaaaaaaaccaaaagctatttattacttttctatttttc |
14703501 |
T |
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| Q |
301 |
cacaaaaagtacaaaacataaacggtgctcaagatctcaaacatgtgatatt |
352 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14703502 |
cacaaaaagtacaaaacataaacggtgcttaagatctcaaacatgtgatatt |
14703553 |
T |
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