View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_high_32 (Length: 356)
Name: NF6973_high_32
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 341
Target Start/End: Original strand, 7126380 - 7126711
Alignment:
| Q |
10 |
gtggtggagccgagcctttttcagcgtatccaagattgaatagtttgatgatttctaattttgaaattattggtgaacaaaatctatacatatcaagtac |
109 |
Q |
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| T |
7126380 |
gtggtggagccgagcctttttcagcgtatccaagattgaatagtttgatgatttctaattttgaaattattggtgaacaaaatctatacatatcaagtac |
7126479 |
T |
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| Q |
110 |
cacgcttgtcaaattaaaaatacaagtatattatgaacccaagaaaaaccactgcaaaattgagttattgacgccaggtctttgtacttttgcttttgtc |
209 |
Q |
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| T |
7126480 |
cacgcttgtcaaattaaaaattcaagtatattatgaacccaagaaaaactactgcaaaattgagttatcaacgccaggtctttgtactttttcttttgtc |
7126579 |
T |
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| Q |
210 |
ggtacacctttcgagatactatcaggaaacaatcctagttctgttaaacacgtcaagatttatgcaaatatgtggtggaattatgtaacggctccttcga |
309 |
Q |
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| T |
7126580 |
ggtacacctttcgagatactatcaggaaacaatcctagttctgttaaacacgtcaagatttatgcaaatatgtggtggaattatgtaactgctccttcga |
7126679 |
T |
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| Q |
310 |
ttctccttagctggttgcaagagcttgctgat |
341 |
Q |
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| T |
7126680 |
ttctccttagctggttgcaagagcttgctgat |
7126711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 7119253 - 7119339
Alignment:
| Q |
45 |
ttgaatagtttgatgatttctaattttgaaattattggtgaacaaaatctatacatatcaagtaccacgcttgtcaaattaaaaata |
131 |
Q |
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| T |
7119253 |
ttgaatagtttgatgctttctgattttaaaattcttggggaacaaaatctatccatatcaagtaccacgctggacaaattagaaata |
7119339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 7103898 - 7103778
Alignment:
| Q |
11 |
tggtggagccgagcctttttcagcgtatccaagattgaatagtttgatgatttctaattttgaaattattggtgaacaaaatctatacatatcaagtacc |
110 |
Q |
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| T |
7103898 |
tggtggagctgatcctttttctgggtttcccatgttgaaaagtttgaggatttcttgttctaaaattttgggtgaacaaaatctatgcatatcaagtatc |
7103799 |
T |
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| Q |
111 |
acgcttgtcaaattaaaaata |
131 |
Q |
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| T |
7103798 |
acgcttgtaaaattaacaata |
7103778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 7103741 - 7103676
Alignment:
| Q |
165 |
aaaattgagttattgacgccaggtctttgtacttttgcttttgtcggtacacctttcgagatacta |
230 |
Q |
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| T |
7103741 |
aaaattgagttatctacgccaagtctttgttcctttgtttttgtcggtactccttttcagatacta |
7103676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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