View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_high_36 (Length: 330)
Name: NF6973_high_36
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 15514023 - 15513717
Alignment:
| Q |
16 |
catgaccaacctgtgaacatgaaaatgtttgatttgggaagacaatttgattctgatgatgaaaaaactgagattggtatcaataaaagacatgttgcca |
115 |
Q |
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| T |
15514023 |
catgaccaacctgtgaacatgaaaatgtttgatttgggaagacaatttgattctgatgatgaaaaaactgagatttgcatcaagaaaagacatgttgcca |
15513924 |
T |
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| Q |
116 |
atccaaagagggagtttatcttccccatcttatataaggcgttgatctgatcaatggggtaattattggccatggagcttgcttgagatagagagaatat |
215 |
Q |
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| T |
15513923 |
atccaaagagggagtttatcttccccatcttatataaggcgttgatctgatcaatggggtaattattggccatggagcttgcttgagatagagagaatat |
15513824 |
T |
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| Q |
216 |
acgtagtaatttcacttagattatttgctgattatgaaaaagttgtgtagagaggtgatatatgtagaggaaggaagaaagtttggtcgacatgacatga |
315 |
Q |
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| T |
15513823 |
acgtagtaatttcacttggattatttgctgattattaaaaagttgtgtagagaggtgatatatgtagaggaaggaagaaagtttggtcgatatgacatga |
15513724 |
T |
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| Q |
316 |
tgtccat |
322 |
Q |
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|||||| |
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| T |
15513723 |
ggtccat |
15513717 |
T |
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