View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_high_42 (Length: 316)
Name: NF6973_high_42
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 10552422 - 10552703
Alignment:
| Q |
16 |
catcaagagaaagaactaaggtcatgtaaagagtagttgaagcaaagatgttagaaataaaatcaagggatatagatagcatttcaaagttgtatgaaat |
115 |
Q |
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| T |
10552422 |
catcaagagaaagaactaaggtcatgtaaagagtagttgaagcaaagatgttagaaataaaatcaagggatatagatagcatttcaaagttttatgaaat |
10552521 |
T |
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| Q |
116 |
tctcatgaaggatgcatctatgatgaatgaaattgaactactggttcaaatgaatttaccgacattttcataggagaatccctaactgtaaagtacacag |
215 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10552522 |
tctcatgaagaatacatctatgatgaatgaaattgaactactggttcaaatgaatttaccgacattttcataggagaatccccaactgtaaagtacacag |
10552621 |
T |
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| Q |
216 |
tgaataaaaccgcgtataataggagttaccatctagcctatgctatttatcctgagtgagccacaattgtcaatgccatctc |
297 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10552622 |
tgaataaaaccgcgtataataggacttactatctagcctatgctatttatcctgagtgagctacaattgtcaatgccatctc |
10552703 |
T |
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