View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_high_46 (Length: 286)
Name: NF6973_high_46
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 28850353 - 28850169
Alignment:
| Q |
1 |
tcactgcatgtaaatgacggcactgttcatcatcaccccaaataaaacctctttgcaacttctgaatctcatgaagatacgatttaggaataacacaact |
100 |
Q |
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| T |
28850353 |
tcactgcatgtaaatgtcggcgctgttcatcctcaccccaaataaaatctctttgcaacttctgaatctcataaagacacgatttaggaataacacaact |
28850254 |
T |
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| Q |
101 |
catcatcggataaataggaactgcttcaataaatgatttagcaaaagtcactctaccagcaaaggaaagatgttttgctttccat |
185 |
Q |
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| T |
28850253 |
catcatcggataaataaaaactgcttcaataactgatttagcaagagtcactcaaccgacaaaggaaagatgttttgctatccat |
28850169 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 21311110 - 21311199
Alignment:
| Q |
137 |
tttagcaaaagtcactctaccagcaaaggaaagatgttttgctttccatgacaccagtttatttctcacttgatcaataatatactgaaa |
226 |
Q |
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|||||| ||||| ||||| || | ||||||||| ||||| |||||||| | || || ||||| || |||||||||| |||||||||||| |
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| T |
21311110 |
tttagccaaagtaactctccctggaaaggaaagttgtttagctttccaggccataagcttattgctgacttgatcaacaatatactgaaa |
21311199 |
T |
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