View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6973_high_47 (Length: 283)
Name: NF6973_high_47
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_47 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 3017062 - 3017327
Alignment:
| Q |
1 |
taatgctggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggtaagaactgttgcatacatgactacaggttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3017062 |
taatgctggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggtaagaactgttgcatacatgactacaggtcta |
3017161 |
T |
|
| Q |
101 |
gcattatagcttcggtattttatctttgcatttcttagattttacgttgaacttgaccccacaaaactgacttgtaaggtgaggattacccaaactttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3017162 |
gcattatagcttcggtattttatctttgcatttcttagattttacgttgaacttgaccccacaaaactgacttgtaaggtgaggattacccaaactttgt |
3017261 |
T |
|
| Q |
201 |
aagcaatgtttagatgtgggacttgggcattttctcgaatagcaattttttatagtcatacatgat |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3017262 |
aagcaatgtttagatgtgggacttgggcattttctcgaatagcaattttttatagtcatacatgat |
3017327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 3020414 - 3020478
Alignment:
| Q |
202 |
agcaatgtttagatgtgggacttgggcattttctcgaatagcaattttttatagtcatacatgat |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3020414 |
agcaatgtttagatgtgggacttgggcattttctcgaatagcaattttttatagtcatgcatgat |
3020478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3032798 - 3032867
Alignment:
| Q |
1 |
taatgctggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggta |
70 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
3032798 |
taatgctggatcttgaatgcgatgccctcattttggagatgtttcagcatttcttgaagacaataaggta |
3032867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 48969923 - 48969855
Alignment:
| Q |
1 |
taatgctggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggt |
69 |
Q |
| |
|
||||| |||| ||||| |||||||| || |||||||||||||||| || ||| |||||||| ||||||| |
|
|
| T |
48969923 |
taatgttggaccttgattgtgatgcgctgattttggagatgtttcagcattttttgaagaccataaggt |
48969855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University