View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_high_54 (Length: 256)
Name: NF6973_high_54
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 17867162 - 17867383
Alignment:
| Q |
20 |
atcagtgggcggcaggccaaaaacaattagatgcctgcacgtatgcatacgatgcgaagaaaagagggtattaaacaagagatagactctaataaaacta |
119 |
Q |
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| T |
17867162 |
atcagtgggcggcaggccaaaaacaattagatgcctgcacgtatgcatacgatgcgaaggaaagagggtattaaacaagagatagactctaataaaacta |
17867261 |
T |
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| Q |
120 |
gccacttttnnnnnnntaagtattcacattattttccatcaccgacaaaaagataactgattaggaaaattaaagttatcatacaaaacagcatacctga |
219 |
Q |
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| T |
17867262 |
gccactttt-aaaaaataagcattcacattattttccatcaccgacaaaaagataactgattaggaaaattaaagttatcatacaaaacagcatacctga |
17867360 |
T |
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| Q |
220 |
tgacagatctcacaagtgatgtc |
242 |
Q |
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||||||||||||||||||||||| |
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| T |
17867361 |
tgacagatctcacaagtgatgtc |
17867383 |
T |
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