View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_high_58 (Length: 232)
Name: NF6973_high_58
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_58 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 23996413 - 23996198
Alignment:
| Q |
17 |
cgcaaacatcagtccaacatagggtattaataccgtcacgaacagagcgactaacatggttgttaaaccacccctcctcacgcaacagaaaaatattcct |
116 |
Q |
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| T |
23996413 |
cgcaaacatcagtccaacagagggtattaataccgtcacgaacagagcgactaacatggttgttaaaccatccctcctcacgcaacagaaaaatattcct |
23996314 |
T |
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| Q |
117 |
ccaccacagagagccgtctcggccaccctgacaacactggcctccctccaccccataccgagtcgacataccacttccctaacaaagaaagtttaaactc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23996313 |
ccaccacagagagccgtctcggccaccctgacaacagtggcctccctccaccccataccgagtcgacataccacttccctaacaaagaaagtttaaactc |
23996214 |
T |
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| Q |
217 |
cctaattctccttacc |
232 |
Q |
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|||||||||||||||| |
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| T |
23996213 |
cctaattctccttacc |
23996198 |
T |
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