View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6973_high_59 (Length: 229)
Name: NF6973_high_59
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_59 |
 | |
|
| [»] scaffold0510 (2 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0053 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4715303 - 4715523
Alignment:
| Q |
1 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagctacactcaatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715303 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggc |
4715402 |
T |
|
| Q |
101 |
aataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715403 |
aataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagg |
4715502 |
T |
|
| Q |
201 |
gtaccctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4715503 |
gtaccctccggaggtgatgtc |
4715523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4023402 - 4023622
Alignment:
| Q |
1 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagctacactcaatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4023402 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggc |
4023501 |
T |
|
| Q |
101 |
aataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4023502 |
aataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaggcaga |
4023601 |
T |
|
| Q |
201 |
gtaccctccggaggtgatgtc |
221 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4023602 |
ttaccctccggaggtgatgtc |
4023622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 4709697 - 4709913
Alignment:
| Q |
5 |
cctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagctacactcaatggcaata |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709697 |
cctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaata |
4709796 |
T |
|
| Q |
105 |
ccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtac |
204 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709797 |
ccagtgccatacccatacttggaatatactggaacctacaaaccatgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtac |
4709896 |
T |
|
| Q |
205 |
cctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4709897 |
cctccggaggtgatgtc |
4709913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4735109 - 4735329
Alignment:
| Q |
1 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagctacactcaatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4735109 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggc |
4735208 |
T |
|
| Q |
101 |
aataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4735209 |
aataccagtgccatacccatacttggaatatactggaacctacaaaccatgctaatacttatcttcagcagtctcagtatttagtgcagaagcaagcagg |
4735308 |
T |
|
| Q |
201 |
gtaccctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4735309 |
gtaccctccggaggtgatgtc |
4735329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7066449 - 7066669
Alignment:
| Q |
1 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagctacactcaatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7066449 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagatgccaatcacaactgcctttgactttgccagctacactcaatggc |
7066548 |
T |
|
| Q |
101 |
aataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7066549 |
aataccagtgccatacccatacttggaatatgctgggagctacaaactgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaggcaga |
7066648 |
T |
|
| Q |
201 |
gtaccctccggaggtgatgtc |
221 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7066649 |
ttaccctccggaggtgatgtc |
7066669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 34652191 - 34652038
Alignment:
| Q |
68 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
167 |
Q |
| |
|
|||| ||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
34652191 |
ctgcttttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
34652092 |
T |
|
| Q |
168 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| |||||||||||||| |
|
|
| T |
34652091 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccggaggtgatgtc |
34652038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 8189662 - 8189878
Alignment:
| Q |
5 |
cctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagctacactcaatggcaata |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189662 |
cctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaata |
8189761 |
T |
|
| Q |
105 |
ccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189762 |
ccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtac |
8189861 |
T |
|
| Q |
205 |
cctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8189862 |
cctccggaggtgatgtc |
8189878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14291168 - 14290948
Alignment:
| Q |
1 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagctacactcaatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14291168 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacacacaatggc |
14291069 |
T |
|
| Q |
101 |
aataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14291068 |
aataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagg |
14290969 |
T |
|
| Q |
201 |
gtaccctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14290968 |
gtaccctccggaggtgatgtc |
14290948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 221
Target Start/End: Original strand, 48350362 - 48350515
Alignment:
| Q |
68 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
167 |
Q |
| |
|
|||| ||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
48350362 |
ctgcttttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
48350461 |
T |
|
| Q |
168 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| |||||||||||||| |
|
|
| T |
48350462 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccggaggtgatgtc |
48350515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 1944096 - 1944008
Alignment:
| Q |
1 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagcta |
89 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||| ||||||||||||||| ||| |||| ||||||| |||||||| ||||| |
|
|
| T |
1944096 |
caagcctcatcttctcaggcaccgcacccacacccagggcccgaaccatttcagaccccatccacggctgccttcgactttgcaagcta |
1944008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 15944520 - 15944433
Alignment:
| Q |
1 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagct |
88 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||| ||||||||||||| | ||| |||| |||||||| |||||||| |||| |
|
|
| T |
15944520 |
caagcctcatcttctcaggcaccgcacccacacccagggcccgaaccatttcaaaccccatccacgactgccttcgactttgcaagct |
15944433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 1945929 - 1946016
Alignment:
| Q |
1 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagcta |
89 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||| ||||||||||||||| ||| |||| ||||||| |||||||| ||||| |
|
|
| T |
1945929 |
caagcctcatcttctcaggcaccgcacccacacccagggcccgaaccatttcagaccccatccac-gctgccttcgactttgcaagcta |
1946016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2161057 - 2160837
Alignment:
| Q |
1 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagctacactcaatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2161057 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggc |
2160958 |
T |
|
| Q |
101 |
aataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2160957 |
aataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagcctcagtatttagtgcagcagcaagcagg |
2160858 |
T |
|
| Q |
201 |
gtaccctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2160857 |
gtaccctccggaggtgatgtc |
2160837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34838017 - 34838237
Alignment:
| Q |
1 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagctacactcaatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34838017 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggc |
34838116 |
T |
|
| Q |
101 |
aataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagg |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34838117 |
aataccagtgccataaccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagg |
34838216 |
T |
|
| Q |
201 |
gtaccctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34838217 |
gtaccctccggaggtgatgtc |
34838237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45019240 - 45019020
Alignment:
| Q |
1 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagctacactcaatggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
45019240 |
caagcctcatcttctcaggcacatcatccacaatcagggtctgaaccatttcagatgccaaccacaactgccttcgactttgccagctacacacaatggc |
45019141 |
T |
|
| Q |
101 |
aataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45019140 |
aataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaggcaga |
45019041 |
T |
|
| Q |
201 |
gtaccctccggaggtgatgtc |
221 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
45019040 |
ataccctccggaggtgatgtc |
45019020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 35087449 - 35087232
Alignment:
| Q |
5 |
cctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagctacactcaatggcaata |
104 |
Q |
| |
|
|||| ||||||||||||| ||||||||| ||||| |||||||||||||||| ||| ||| ||||||| ||||||||||||||| | |||||||| | |
|
|
| T |
35087449 |
cctcctcttctcaggcaccgcatccacaaccagggcccgaaccatttcagattccatccatggctgccttcgactttgccagctacgcataatggcaaca |
35087350 |
T |
|
| Q |
105 |
ccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtac |
204 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||| || || ||||||||||| || ||| | |||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
35087349 |
ttagtgccatactcatacatggaacatgctggaggcaactaaccgtgctaacacatatttctagcattctcagtatttgatgcagcaacaagcagggtac |
35087250 |
T |
|
| Q |
205 |
cctccggaggtgatgtcc |
222 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
35087249 |
cctccggagttgatgtcc |
35087232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 221
Target Start/End: Original strand, 39056557 - 39056710
Alignment:
| Q |
68 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
167 |
Q |
| |
|
|||| ||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
39056557 |
ctgcttttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
39056656 |
T |
|
| Q |
168 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| |||||||||||||| |
|
|
| T |
39056657 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccggaggtgatgtc |
39056710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 41302376 - 41302524
Alignment:
| Q |
73 |
tttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagt |
172 |
Q |
| |
|
|||||| |||| |||| | ||||||||||||||||||||||||| ||| | ||||| |||||||| | || |||||||||||||| ||||||||||||| |
|
|
| T |
41302376 |
tttgacgttgcaagcttcgctcaatggcaataccagtgccatactcatgcatggaacatgctggactcaactaaccgtgctaatacatatcttcagcagt |
41302475 |
T |
|
| Q |
173 |
ctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtc |
221 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
41302476 |
ctcagtatttgatgcagcagcaggcagggtacccaccggaggtgatgtc |
41302524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 221
Target Start/End: Complemental strand, 41294449 - 41294302
Alignment:
| Q |
74 |
ttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtc |
173 |
Q |
| |
|
|||| ||||| |||| | |||||||||||||||| |||||||| | |||||||| |||||||| || || ||||| || ||||| || | ||||| || |
|
|
| T |
41294449 |
ttgattttgcaagcttcgctcaatggcaataccaatgccatacttacacttggaacatgctggacgccactaaccgagcaaatacctacttccagcaatc |
41294350 |
T |
|
| Q |
174 |
tcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtc |
221 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
41294349 |
ccagtatttgatgcagcagcatgcagggtacccaccagaggtgatgtc |
41294302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 2963288 - 2963135
Alignment:
| Q |
68 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
167 |
Q |
| |
|
|||| ||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
2963288 |
ctgcttttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
2963189 |
T |
|
| Q |
168 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| |||||||||||||| |
|
|
| T |
2963188 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccggaggtgatgtc |
2963135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 29977302 - 29977149
Alignment:
| Q |
68 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
167 |
Q |
| |
|
|||| ||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
29977302 |
ctgcttttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
29977203 |
T |
|
| Q |
168 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| |||||||||||||| |
|
|
| T |
29977202 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccggaggtgatgtc |
29977149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 221
Target Start/End: Original strand, 30019340 - 30019493
Alignment:
| Q |
68 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
167 |
Q |
| |
|
|||| ||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
30019340 |
ctgcttttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
30019439 |
T |
|
| Q |
168 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| |||||||||||||| |
|
|
| T |
30019440 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccggaggtgatgtc |
30019493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 22354288 - 22354200
Alignment:
| Q |
1 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagcta |
89 |
Q |
| |
|
||||||||||||||||||| || || ||||| ||||| ||||||||||||||| ||| |||| ||||||| |||||||| ||||| |
|
|
| T |
22354288 |
caagcctcatcttctcaggtaccgcacccacacccagggcccgaaccatttcagaccccatccacggctgccttcgactttgcaagcta |
22354200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 221
Target Start/End: Original strand, 9573835 - 9573988
Alignment:
| Q |
68 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
167 |
Q |
| |
|
|||| ||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
9573835 |
ctgcttttgactttgcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
9573934 |
T |
|
| Q |
168 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| || ||||||||||| |
|
|
| T |
9573935 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccagaggtgatgtc |
9573988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 222
Target Start/End: Complemental strand, 8050109 - 8049956
Alignment:
| Q |
68 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
167 |
Q |
| |
|
|||| ||||| ||||| | |||| | ||||||||| |||||||| |||| ||||| || || |||||||| || || ||||||||||| || ||| || | |
|
|
| T |
8050109 |
ctgcttttgattttgcaaactacgcccaatggcaacaccagtgcaatactcatacatgaaacatgctggaggcaactaaccgtgctaacacatattttta |
8050010 |
T |
|
| Q |
168 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcc |
222 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||| ||||||||||||||| |
|
|
| T |
8050009 |
gcagtctcagtatttgatgcggcagcagacagggtaccc-ccggaggtgatgtcc |
8049956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 68 - 221
Target Start/End: Original strand, 8010200 - 8010353
Alignment:
| Q |
68 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
167 |
Q |
| |
|
|||| ||||||||| | |||| | |||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
8010200 |
ctgcttttgacttttcaagcttcgctcaatggcaataccagtgccatacccataaatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
8010299 |
T |
|
| Q |
168 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtc |
221 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| |||||||||||||| |
|
|
| T |
8010300 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccggaggtgatgtc |
8010353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0510
Description:
Target: scaffold0510; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 5737 - 5885
Alignment:
| Q |
73 |
tttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagt |
172 |
Q |
| |
|
|||||| |||| |||| | ||||||||||||||||||||||||| ||| | ||||| |||||||| | || |||||||||||||| ||||||||||||| |
|
|
| T |
5737 |
tttgacgttgcaagcttcgctcaatggcaataccagtgccatactcatgcatggaacatgctggactcaactaaccgtgctaatacatatcttcagcagt |
5836 |
T |
|
| Q |
173 |
ctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtc |
221 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
5837 |
ctcagtatttgatgcagcagcaggcagggtacccaccggaggtgatgtc |
5885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 221
Target Start/End: Original strand, 12171 - 12318
Alignment:
| Q |
74 |
ttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtc |
173 |
Q |
| |
|
|||| ||||| |||| | |||||||||||||||| |||||||| | |||||||| |||||||| || || ||||| || ||||| || | ||||| || |
|
|
| T |
12171 |
ttgattttgcaagcttcgctcaatggcaataccaatgccatacttacacttggaacatgctggacgccactaaccgagcaaatacctacttccagcaatc |
12270 |
T |
|
| Q |
174 |
tcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtc |
221 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
12271 |
ccagtatttgatgcagcagcatgcagggtacccaccagaggtgatgtc |
12318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 5897 - 6108
Alignment:
| Q |
4 |
gcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagctacactcaatggcaat |
103 |
Q |
| |
|
||||| |||||||||||| ||||||||| |||||||||||||||||||||| ||| |||| |||||||| |||||| |||||||| | ||||||||| |
|
|
| T |
5897 |
gcctcttcttctcaggcaacacatccacaaccagggtccgaaccatttcagattccacccacgactgccttcgacttttccagctacgcacaatggcaac |
5996 |
T |
|
| Q |
104 |
accagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggta |
203 |
Q |
| |
|
| ||||||||||| || |||||||| ||||||| ||| || ||||| || || || || | |||||||| || ||| | |||| |||||||||||||| |
|
|
| T |
5997 |
atcagtgccatactcacacttggaacatgctggcagccactaaccgagccaacacatacttccagcagtcccaatatctgatgcaacagcaagcagggta |
6096 |
T |
|
| Q |
204 |
ccctccggaggt |
215 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6097 |
ccctccggaggt |
6108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 53152 - 53064
Alignment:
| Q |
1 |
caagcctcatcttctcaggcacatcatccacaatcagggtccgaaccatttcagataccaaccacaactgcctttgactttgccagcta |
89 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||| ||||||||||| ||| ||| |||| ||||||| |||||||| ||||| |
|
|
| T |
53152 |
caagcctcatcttctcaggcaccccacccacacccagggcccgaaccattttagaccccatccacggctgccttcgactttgcaagcta |
53064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University