View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_high_9 (Length: 571)
Name: NF6973_high_9
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 27447345 - 27447717
Alignment:
| Q |
1 |
tgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagttagtccagagaggtaatcatttgaagaaggaggaggatgaa |
100 |
Q |
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| T |
27447345 |
tgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagtgagtccagagaggtaatcatttgaagaaggaggaggatgaa |
27447444 |
T |
|
| Q |
101 |
caacctcttccttgcactcctcctttttcactgagagaaaaggacagtcttgtttggctggtgttgggaaagagttgtcaaaactaagaaacatggaaga |
200 |
Q |
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| T |
27447445 |
caacctcttccttgcactcctcctttttcactgagagaaaaggacagtcttgtttggctggtgttgggaaagagttgtcaaaactaagaaacatggaaga |
27447544 |
T |
|
| Q |
201 |
gtgatcagtaggataatctactatgatctcagggttttgcaagattctacaagtatgatgggcatagtaggttgttttgtaaagaggtggatcctcttga |
300 |
Q |
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| T |
27447545 |
gtgatcagtaggataatctactatgatctcagggttttgcaagattctacaagtatgatggcctgaataggttgtcctgtgaagaggtggatcctcttga |
27447644 |
T |
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| Q |
301 |
atttgttgcacttgttttgttgctttgcaaccttgatcatgtttgtgagtgcacctgtaatagttcctgcaaa |
373 |
Q |
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||| ||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
27447645 |
attctttggacttgttttattgctttgcaaccttgatcatttttgtgagtgcatctgtaatagttcctgcaaa |
27447717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 132 - 561
Target Start/End: Original strand, 27430229 - 27430654
Alignment:
| Q |
132 |
tgagagaaaaggacagtcttgtttggctggtgttgggaaagagttgtcaaaactaagaaacatggaagagtgatcagtaggataatctactatgatctca |
231 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||| |||| |||| | |||||||||| |
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| T |
27430229 |
tgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaagctaaggaacatggaagactggtcacaaggagaatccattatgatctca |
27430328 |
T |
|
| Q |
232 |
gggttttgcaagattctacaagtatgatgggcatagtaggttgttttgtaaagaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaac |
331 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430329 |
gagctttgcaagattctacaagtatgatgggcatagtaggttgttttgtaaagaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaac |
27430428 |
T |
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| Q |
332 |
cttgatcatgtttgtgagtgcacctgtaatagttcctgcaaagc--atataaataaatatatattcccatagtgaaaattaattaatttgaaaatcaata |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430429 |
cttgatcatgtttgtgagtgcacctgtaatagttcctgcaaagcatatataaataaatatatattcccatagtgaaaattaattaatttgaaaatcaata |
27430528 |
T |
|
| Q |
430 |
attaacatgataatgtgttcaaatagtgaagttagtgcttaattaaactcgtaaaannnnnnnnnnnnnnnccttggaaaatcggtgtgcaagatcnnnn |
529 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27430529 |
attaacatgataatttgttcaaatagtgaagtttgtgcttaattaaactcgtaaaa------atatatataccttggaaaatcggtgtgcaagatctttt |
27430622 |
T |
|
| Q |
530 |
nnngcccatactttctccattgatgtccatct |
561 |
Q |
| |
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|||||||||||||||||||||| |||||| |
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| T |
27430623 |
tttgcccatactttctccattgatgaccatct |
27430654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 27430068 - 27430201
Alignment:
| Q |
1 |
tgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagttagtccagagaggtaatcatttgaagaaggaggaggatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430068 |
tgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagttagtccagagaggtaatcatttgaagaaggaggaggatgaa |
27430167 |
T |
|
| Q |
101 |
caacctcttccttgcactcctcctttttcactga |
134 |
Q |
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||| |||||||||||| |||||| |||||||||| |
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| T |
27430168 |
caatctcttccttgcaatcctcccttttcactga |
27430201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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