View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6973_low_11 (Length: 642)
Name: NF6973_low_11
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 558; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 1 - 631
Target Start/End: Original strand, 14302190 - 14302820
Alignment:
| Q |
1 |
taagataacctgggagaaactgaattgaactgtcatttacataaaaaatcaaacattttagggacctgtgagcatatacataccattatagagtcaacat |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14302190 |
taagataacttgggagaaactgaattgaactgtcatttacataaaaaatcaaacattttagggacttgtgagcatatacataccattatagagtcaacat |
14302289 |
T |
|
| Q |
101 |
tatgcaagaaatcaacttggtgtgttacaagtaaaactgccttatctttgagagttcccatgatacattcctgcaacaaaaatagagaatcaggaacttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14302290 |
tatgcaagaaatcaacttggtgtgttacaagtaaaactgccttatctttgagagttcccatgatacattcctgcaacaaaaatagagaatcaggaacttc |
14302389 |
T |
|
| Q |
201 |
attcgtgactgcattagnnnnnnnctgacgttatcattttgattgatataatataatgtttctaaaatgagaaacatcgttatatcactaaaaactagaa |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14302390 |
attcgtgactgcattagaaaaaaactgacgttatcattttgattaatataatataatgtttctaaaatgagaaacatcgttatatcactaaaaactagaa |
14302489 |
T |
|
| Q |
301 |
aattaagctatttagcacttcttgtaagttgtaactttgtgcttaccttaaaaataaatgatcctgtttgagcatcaacagcactgaatacatcatcaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14302490 |
aattaagctatttagcacttcttgtaagttgtaactttgtgcttaccttaaaaataaatgatcctgtttgagcatcaacagcactgaatacatcatcaag |
14302589 |
T |
|
| Q |
401 |
gagatagatgtcactgtcttgatatacagctctagcaagttgtatgcgttgtttctggcctccgctgaggttaataccgcgctctccaatctcagtttcg |
500 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||| |
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|
| T |
14302590 |
gagatagatgtcactgtcctgatatacagctctagcaagttgtatgcgctgtttctggccgccactgaggttaataccgcgctctccaatctcggtttcg |
14302689 |
T |
|
| Q |
501 |
tcaccatattccatcatttcaagatccttttcaaggcagcacactcttaaagcttctttgtacttttccatgttcattggtaaaccaaacaatatgtttt |
600 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
14302690 |
tcaccatcttccatcattacaagatccttttcaaggcagcacactcttagagcttccttgtacttttccatgttcattggcaaaccaaacaatatgtttt |
14302789 |
T |
|
| Q |
601 |
ctttgatggttgcattctgaatccatgatgt |
631 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
14302790 |
ctttgatggttgcattctgaatccatgatgt |
14302820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 280 - 632
Target Start/End: Original strand, 14281085 - 14281437
Alignment:
| Q |
280 |
ttatatcactaaaaactagaaaattaagctatttagcacttcttgtaagttgtaactttgtgcttaccttaaaaataaatgatcctgtttgagcatcaac |
379 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14281085 |
ttatatcattaaaaactagaaaatgaagctatttagcccttcttgtaagttttaactttgtgcttgccttaaaaataaatgatcctgtttgagcatcaac |
14281184 |
T |
|
| Q |
380 |
agcactgaatacatcatcaaggagatagatgtcactgtcttgatatacagctctagcaagttgtatgcgttgtttctggcctccgctgaggttaataccg |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14281185 |
ggcactgaatacatcatcaaggagatagatgtcactgtcttgatatacagctctagcaagttgtatgcgttgtttctggcctccgctgaggttaataccg |
14281284 |
T |
|
| Q |
480 |
cgctctccaatctcagtttcgtcaccatattccatcatttcaagatccttttcaaggcagcacactcttaaagcttctttgtacttttccatgttcattg |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14281285 |
cgctctccaatctcagtttcgtcaccatattccatcatttcaagatccttttcaaggcagcacactcttaaagcttctttgtacttttccatgttcattg |
14281384 |
T |
|
| Q |
580 |
gtaaaccaaacaatatgttttctttgatggttgcattctgaatccatgatgtc |
632 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14281385 |
gtaaaccaaacaatatgttttctttgatggttgcattctgaatccatgatgtc |
14281437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 325 - 631
Target Start/End: Original strand, 14318962 - 14319268
Alignment:
| Q |
325 |
taagttgtaactttgtgcttaccttaaaaataaatgatcctgtttgagcatcaacagcactgaatacatcatcaaggagatagatgtcactgtcttgata |
424 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
14318962 |
taagttgtaaatttttgcttaccttaaaaataaatgatcctgtttcagcatcaacagcactgaatacatcatcaaggagatagatgtcagtgtcatgata |
14319061 |
T |
|
| Q |
425 |
tacagctctagcaagttgtatgcgttgtttctggcctccgctgaggttaataccgcgctctccaatctcagtttcgtcaccatattccatcatttcaaga |
524 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
14319062 |
tacagctctagcaagttgtacccgttgtttctggccaccactgaggttaatacctcgctctccaatctcagtttcatcaccatcttccatcatttcaaga |
14319161 |
T |
|
| Q |
525 |
tccttttcaaggcagcacactcttaaagcttctttgtacttttccatgttcattggtaaaccaaacaatatgttttctttgatggttgcattctgaatcc |
624 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14319162 |
tccttttcaaggcagcacactcttaaagtttccctgtacttttccaagttcattggtaagccaaacaatatgttttctttgatggttgcattctgaatcc |
14319261 |
T |
|
| Q |
625 |
atgatgt |
631 |
Q |
| |
|
||||||| |
|
|
| T |
14319262 |
atgatgt |
14319268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 14280793 - 14280995
Alignment:
| Q |
1 |
taagataacctgggagaaactgaattgaactgtcatttacataaaaaatcaaacattttagggacctgtgagcatatacataccattatagagtcaacat |
100 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
14280793 |
taagataatttgggagaaattgaattgaatcatcatttatagaaaatctcaaacattttagggacttgtgagcatatacataccattatagagtcgacat |
14280892 |
T |
|
| Q |
101 |
tatgcaagaaatcaacttggtgtgttacaagtaaaactgccttatctttgagagttcccatgatacattcctgcaacaaaaatagagaatcaggaacttc |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14280893 |
tatgcaagaaatcaacttgatgtgttacaagtaaaacagttttatctttaagagttcccatgatacattcctgcaacaaaaatagagaatcaggaaattc |
14280992 |
T |
|
| Q |
201 |
att |
203 |
Q |
| |
|
||| |
|
|
| T |
14280993 |
att |
14280995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 14318695 - 14318795
Alignment:
| Q |
79 |
cataccattatagagtcaacattatgcaagaaatcaacttggtgtgttacaagtaaaactgccttatctttgagagttcccatgatacattcctgcaaca |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
14318695 |
cataccattatagagtcaacattatgcaagaaatcaacttggtgggttacaagtaaaacagtcttatctttgagagctcccatgatacattcctgtaaca |
14318794 |
T |
|
| Q |
179 |
a |
179 |
Q |
| |
|
| |
|
|
| T |
14318795 |
a |
14318795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 14318839 - 14318872
Alignment:
| Q |
232 |
tatcattttgattgatataatataatgtttctaa |
265 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
14318839 |
tatcattttgattgatataatatattgtttctaa |
14318872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 335 - 631
Target Start/End: Original strand, 25884153 - 25884449
Alignment:
| Q |
335 |
ctttgtgcttaccttaaaaataaatgatcctgtttgagcatcaacagcactgaatacatcatcaaggagatagatgtcactgtcttgatatacagctcta |
434 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| ||||||||| |
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|
| T |
25884153 |
ctttgttcttactttaaaaataaacgatcctgtttgagcatcaacagcactgaatatatcatcaaggagatagatgtcagtgtcctgatacacagctcta |
25884252 |
T |
|
| Q |
435 |
gcaagttgtatgcgttgtttctggcctccgctgaggttaataccgcgctctccaatctcagtttcgtcaccatattccatcatttcaagatccttttcaa |
534 |
Q |
| |
|
|| ||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||| ||| | ||||||| |||||||||||||||||||||||||| |
|
|
| T |
25884253 |
gctagttgcacacgttgtttctggcctccactgaggttaataccgcgttctccaatctcggttccatcaccatcttccatcatttcaagatccttttcaa |
25884352 |
T |
|
| Q |
535 |
ggcagcacactcttaaagcttctttgtacttttccatgttcattggtaaaccaaacaatatgttttctttgatggttgcattctgaatccatgatgt |
631 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25884353 |
ggcagcacacccttaaagcttccctgtacttgtccaagttcattggtaaaccgaacaatatgttttctttgatggttgcattctgaatccatgatgt |
25884449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 25883873 - 25884065
Alignment:
| Q |
1 |
taagataacctgggagaaactgaattgaactgtcatttacataaaaaatcaaacattttagggacctgt---gagcatatacataccattatagagtcaa |
97 |
Q |
| |
|
||||||||| ||||| ||| |||||||| | ||||| ||| ||||| |||||||||||||| || ||| |||| ||||||||||||||||||||||| |
|
|
| T |
25883873 |
taagataacttgggaaaaattgaattgagccatcattaacagaaaaactcaaacattttaggtacttgttgtgagcttatacataccattatagagtcaa |
25883972 |
T |
|
| Q |
98 |
cattatgcaagaaatcaacttggtgtgttacaagtaaaactgccttatctttgagagttcccatgatacattcctgcaacaaaaatagagaatc |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
25883973 |
cattatgcaagaaatcaacttggtgtgttacaagtaaaaccgtcttatctttcagagctcccatgatacattcctgcaa-aaagatagagaatc |
25884065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 369 - 591
Target Start/End: Original strand, 39664797 - 39665019
Alignment:
| Q |
369 |
tgagcatcaacagcactgaatacatcatcaaggagatagatgtcactgtcttgatatacagctctagcaagttgtatgcgttgtttctggcctccgctga |
468 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||||| |||||| |||||||||| |||||||| || || || ||||| || || || | |
|
|
| T |
39664797 |
tgagcatcaactgcactgaatacatcatcaagaagatatatgtcacagtcttggtatacagctcgtgcaagttgaatacgctgcttctgaccgccactaa |
39664896 |
T |
|
| Q |
469 |
ggttaataccgcgctctccaatctcagtttcgtcaccatattccatcatttcaagatccttttcaaggcagcacactcttaaagcttctttgtacttttc |
568 |
Q |
| |
|
|||| || || |||||||||||||| || | || |||||||||||||||| | || ||||| | ||| || ||||| | | ||| |||||||||| |
|
|
| T |
39664897 |
ggtttatgccacgctctccaatctctgtctgatccccatattccatcatttgtaagtctttttccaagcaacaaactctgataatttcattgtacttttg |
39664996 |
T |
|
| Q |
569 |
catgttcattggtaaaccaaaca |
591 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39664997 |
tctgttcattggtaaaccaaaca |
39665019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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