View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_12 (Length: 616)
Name: NF6973_low_12
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 16 - 493
Target Start/End: Complemental strand, 4654434 - 4653962
Alignment:
| Q |
16 |
caaacaacagttaacagaatatactatagtaatataatatatattgtttattgaaaatacacaacgttttataaatgactgtttaccgatgaaatcaatg |
115 |
Q |
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| T |
4654434 |
caaacaacagttaacggaatatactatagtaatataatatatattgtttattgaaaatacacaacgttgtataaatgactgtttaccgatgaaatcaatg |
4654335 |
T |
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| Q |
116 |
atgaggcgtccatcggagcaacgtccagacggatgatgaaagtacgtttctccgtagggaggaaataggcagtgatgggagggttgctggttgctgaaat |
215 |
Q |
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| T |
4654334 |
atgaggcgtccatcggagcaacgtccagacggatgatgaaagtacgtttctccgtagggaggaaataggcagtgatgggagggttgctggttgctgaaat |
4654235 |
T |
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| Q |
216 |
acaagttgctggtgtcggcgagggaatcacctcgccgaagctgaagatggaagagcaggaagaggatgccatgactaatgatgcagaagccattactaca |
315 |
Q |
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| T |
4654234 |
acaagttgccggtgtcggcgagggaatcacc-----gaagctgaagatggaagagcaggaagaggatgccatgactaatgatgcagaagccattactaca |
4654140 |
T |
|
| Q |
316 |
agtagtagtatcaatgtactccatcgcttttcagaagccatgactagaaaaattcactattctcaatatattagctccatttatcaatggatttcaatgg |
415 |
Q |
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| T |
4654139 |
agtagtagtatcaatgtactccatcgcttttcagaagccatgactaagaaaattcactattttcaatatattagctccatttatcaatggatttcaatgg |
4654040 |
T |
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| Q |
416 |
tgaatagttcttggcattattgctaacattttgttgtatatttatagttatttcaatagttgttatctatactatatt |
493 |
Q |
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| T |
4654039 |
tgaatagttcttagcattattgctaacattttgttgtatatttatagttatttcaatagttgttatctatactatatt |
4653962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 99 - 270
Target Start/End: Complemental strand, 4633106 - 4632940
Alignment:
| Q |
99 |
taccgatgaaatcaatgatgaggcgtccatcggagcaacgtccagacggatgatgaaagtacgtttctccgtagggaggaaataggcagtgatgggaggg |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| || | ||||||| ||||| |
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| T |
4633106 |
taccgatgaaatcaatgatgaggcgtccatcggagcaacgtccagacggatgatgaaagtaagtttggccatagggagggaagaaacagtgatcagaggg |
4633007 |
T |
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| Q |
199 |
ttgctggttgctgaaatacaagttgctggtgtcggcgagggaatcacctcgccgaagctgaagatggaagag |
270 |
Q |
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| T |
4633006 |
tggttgggagctgagatacaggttgccagtgtcggcaatggaatca-----ccgaagctgaagatggaagag |
4632940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 553 - 606
Target Start/End: Complemental strand, 4653912 - 4653859
Alignment:
| Q |
553 |
gagggagaatcgaaattaagttccaaacttatctcttaaaatgagagatttcat |
606 |
Q |
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| T |
4653912 |
gagggagagtcgaaattaagttccaaacttatctctcaaaatgagagatttcat |
4653859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 4642095 - 4642038
Alignment:
| Q |
99 |
taccgatgaaatcaatgatgaggcgtccatcggagcaacgtccagacggatgatgaaa |
156 |
Q |
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| T |
4642095 |
taccgatgaaatcaacgatgaggcggccatcagagcagcgtccattgggatgatgaaa |
4642038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 553 - 606
Target Start/End: Complemental strand, 2887783 - 2887730
Alignment:
| Q |
553 |
gagggagaatcgaaattaagttccaaacttatctcttaaaatgagagatttcat |
606 |
Q |
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| T |
2887783 |
gagggagagtcgaaattaagttccaaacttatctctgaggatgagagatatcat |
2887730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 605
Target Start/End: Complemental strand, 8266971 - 8266931
Alignment:
| Q |
565 |
aaattaagttccaaacttatctcttaaaatgagagatttca |
605 |
Q |
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| T |
8266971 |
aaattaagttccaagcttatctctcaaaatgagagatttca |
8266931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 553 - 606
Target Start/End: Original strand, 27046049 - 27046102
Alignment:
| Q |
553 |
gagggagaatcgaaattaagttccaaacttatctcttaaaatgagagatttcat |
606 |
Q |
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| T |
27046049 |
gagggagagtcgaaattaagctccaagcttatctcctaggatgagagatttcat |
27046102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 562 - 606
Target Start/End: Complemental strand, 23810209 - 23810165
Alignment:
| Q |
562 |
tcgaaattaagttccaaacttatctcttaaaatgagagatttcat |
606 |
Q |
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| T |
23810209 |
tcgaaattaagtcccaagcttatatcttagaatgagagatttcat |
23810165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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