View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6973_low_16 (Length: 568)

Name: NF6973_low_16
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6973_low_16
NF6973_low_16
[»] chr8 (11 HSPs)
chr8 (19-557)||(44311768-44312299)
chr8 (89-241)||(43895799-43895946)
chr8 (161-241)||(44306223-44306305)
chr8 (23-134)||(44301285-44301395)
chr8 (493-540)||(44300896-44300943)
chr8 (89-133)||(44306353-44306397)
chr8 (23-71)||(43896006-43896054)
chr8 (23-71)||(44306459-44306507)
chr8 (336-395)||(44300979-44301041)
chr8 (161-207)||(44305733-44305779)
chr8 (209-238)||(44301201-44301230)
[»] chr3 (1 HSPs)
chr3 (23-134)||(4084057-4084167)
[»] chr6 (1 HSPs)
chr6 (148-222)||(8159402-8159474)


Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 557
Target Start/End: Complemental strand, 44312299 - 44311768
Alignment:
Q  19 ttcgccagttggtttggcttgttaactttgctttggtttgttgcttatttataacttannnnnnnatggtgaatttgttgcttaattattgatctctgat 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  44312299 ttcgccagttggtttggcttgttaactatgctttggtttgttgcttatttataacttatttttttatggtgaatttgttgcttaattattgatctctgat 44312200  T
Q  119 tagttagtagttactctcnnnnnnnnngttgtgttctgcatttttaacagttgatcctatctctgctgtcaagattatctatttgattcttaagtttaac 218  Q
    ||||||||||||||||           ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312199 tagttagtagttactc--attttttttgttgtgttctgcattt--aacagttgatcctatctctgctgtcaagattatctatttgattcttaagtttaac 44312104  T
Q  219 atttagtgcaaatgtcatgttaaaagcaaaactggattttaagataacttacagaggcaaaataacannnnnnnnnnnngttatttgttgttaataattc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||    
T  44312103 atttagtgcaaatgtcatgttaaaagcaaaactggattttaagataacttacagaggcaaaataacatttttattttttgttatttgttgttaataattc 44312004  T
Q  319 tgatattgtttttatccgaactgcactttaatcataatatatgcaatgacttaactaggcaatgtccgcatcatgctatggattgctcgagtttattatg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312003 tgatattgtttttatccgaactgcactttaatcataatatatgcaatgacttaactaggcaatgtccgcatcatgctatggattgctcgagtttattatg 44311904  T
Q  419 ttttgtattgttcttttaacagcttaacattgaagattaatgtaaattaggatatcaaaattgaagttttaacatatttggagtattgagagaaacacat 518  Q
    ||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44311903 ttttgtattgttcttttaatagcttaacattgaagattaatgtaa---aggatatcaaaattgaagttttaacatatttggagtattgagagaaacacat 44311807  T
Q  519 ttgctgggtttgggaatttgtcacctggctgatgtccat 557  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  44311806 ttgctgggtttgggaatttgtcacctggctcatgtccat 44311768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 89 - 241
Target Start/End: Complemental strand, 43895946 - 43895799
Alignment:
Q  89 gaatttgttgcttaattattgatctctgattagttagtagttactctcnnnnnnnnngttgtgttctgcatttttaacagttgatcctatctctgctgtc 188  Q
    |||||||||||||||||||||||||||||||| ||||||||||||             |||||||||||||||  ||||  ||||||||||||||| |||    
T  43895946 gaatttgttgcttaattattgatctctgattatttagtagttact---aaattttttattgtgttctgcattt--aacacctgatcctatctctgccgtc 43895852  T
Q  189 aagattatctatttgattcttaagtttaacatttagtgcaaatgtcatgttaa 241  Q
    |||||| ||||| |||||| |||||||||||||||||||||||||||||||||    
T  43895851 aagattgtctatgtgattcataagtttaacatttagtgcaaatgtcatgttaa 43895799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 44306305 - 44306223
Alignment:
Q  161 tttaacagttgatcctatctct--gctgtcaagattatctatttgattcttaagtttaacatttagtgcaaatgtcatgttaa 241  Q
    ||||||| ||||||||||||||  |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  44306305 tttaacacttgatcctatctctctgctgtcaagattgtctatgtgattcttaagtttaacatttagtgcaaatgtcatgttaa 44306223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 44301395 - 44301285
Alignment:
Q  23 ccagttggtttggcttgttaactttgctttggtttgttgcttatttataacttannnnnnnatggtgaatttgttgcttaattattgatctctgattagt 122  Q
    |||||| ||||||||||||| ||||||| || ||||||||||||||||||||||       ||||| ||| || ||||||||||||||||||||||||||    
T  44301395 ccagtttgtttggcttgttagctttgctatgttttgttgcttatttataacttatttttt-atggtaaatctgctgcttaattattgatctctgattagt 44301297  T
Q  123 tagtagttactc 134  Q
    ||||||||||||    
T  44301296 tagtagttactc 44301285  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 493 - 540
Target Start/End: Complemental strand, 44300943 - 44300896
Alignment:
Q  493 tatttggagtattgagagaaacacatttgctgggtttgggaatttgtc 540  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44300943 tatttggagtattgagagaaacacatttgctgggtttcggaatttgtc 44300896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 44306397 - 44306353
Alignment:
Q  89 gaatttgttgcttaattattgatctctgattagttagtagttact 133  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  44306397 gaatttgttgcttaattattgatctctgattatttagtagttact 44306353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 43896054 - 43896006
Alignment:
Q  23 ccagttggtttggcttgttaactttgctttggtttgttgcttatttata 71  Q
    ||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  43896054 ccagttgctttggcttgttagctttgctatggtttgttgcttatttata 43896006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 44306507 - 44306459
Alignment:
Q  23 ccagttggtttggcttgttaactttgctttggtttgttgcttatttata 71  Q
    ||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  44306507 ccagttgctttggcttgttagctttgctatggtttgttgcttatttata 44306459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 44301041 - 44300979
Alignment:
Q  336 gaactgcacttta-atcataatatat--gcaatgacttaactaggcaatgtccgcatcatgct 395  Q
    ||||||||||||  ||||||||||||  |||||||||||| |||||| |||||||||||||||    
T  44301041 gaactgcactttttatcataatatatctgcaatgacttaattaggcagtgtccgcatcatgct 44300979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 44305779 - 44305733
Alignment:
Q  161 tttaacagttgatcctatctctgctgtcaagattatctatttgattc 207  Q
    ||||||| ||||||| |||||||||||||||| ||||||| ||||||    
T  44305779 tttaacaattgatcccatctctgctgtcaagaatatctatgtgattc 44305733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 44301230 - 44301201
Alignment:
Q  209 taagtttaacatttagtgcaaatgtcatgt 238  Q
    ||||||||||||||||||||||||||||||    
T  44301230 taagtttaacatttagtgcaaatgtcatgt 44301201  T

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Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 4084167 - 4084057
Alignment:
Q  23 ccagttggtttggcttgttaactttgctttggtttgttgcttatttataacttannnnnnnatggtgaatttgttgcttaattattgatctctgattagt 122  Q
    |||||||||||||||||||| |||| || |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  4084167 ccagttggtttggcttgttagctttactatggtttgttgcttatttataacttatttttt-atggtgaatttgttgcttaattattgatctctgattagt 4084069  T
Q  123 tagtagttactc 134  Q
    ||||||||||||    
T  4084068 tagtagttactc 4084057  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 8159402 - 8159474
Alignment:
Q  148 tgtgttctgcatttttaacagttgatcctatctctgctgtcaagattatctatttgattcttaagtttaacattt 222  Q
    ||||||||||||||  |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  8159402 tgtgttctgcattt--aacacttgatcctatctctgttgtcaatattatctatttgattcttaagtttaacattt 8159474  T

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