View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_17 (Length: 547)
Name: NF6973_low_17
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 21269232 - 21269760
Alignment:
| Q |
1 |
caagctcaagacaaacgagtataagctttcacaggcataaatattataaaaccactcataattgtattaacaaaggaagcatcgcccttacaaagtacag |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21269232 |
caagctcaagacaaatgagtataagctttcacaggcataaatattataaaaccactcataattgtattaacaaaggaagcatcgcccttacaaagtacag |
21269331 |
T |
|
| Q |
101 |
ctgcaacagctgtatgatatactagtagataatagaagatgcattatatgcattagtctggccctaggttaaactaattctattcatagttcataatatg |
200 |
Q |
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| T |
21269332 |
ctgcaacagctgtatgatatactagtagataatagaagatgcattatatgcattagtctggccctaggttaaactaattctattcatagttcataatatg |
21269431 |
T |
|
| Q |
201 |
gcagaagcttcaacacttggttcagacaaccgaacctcctgtctgatgaagcatggcgtcaatttcatccccatcttccatctccaactgaaacaagaca |
300 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21269432 |
gcagaagcttcatcacttggttcagacaacagaacctcctgtctgatgaagcatggcgtcaatttcatccccatcttccatctccaactgaaacaagaca |
21269531 |
T |
|
| Q |
301 |
tatttccatgccataaaacatgaatgttagacaattattatcaaaatatatttggtagagataaagtagtgaagagaaaagcaattatattcacgaacct |
400 |
Q |
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| T |
21269532 |
tatttccatgccataaaacatgaatgttagacaattattatcaaaatatatttggtagagataaagtagtgaagagaaaagcaattatattcacgaacct |
21269631 |
T |
|
| Q |
401 |
catcgggagtctgttcagcacggagacgacgcccatcaaagagaaaagcaatggagttgaaatccacagactgacgatcacagtaagcattcataagctt |
500 |
Q |
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| T |
21269632 |
catcgggagtctgttcagcacggagacgacgcccatcaaagagaaaagcaatggagttgaaatccacagactgacgatcacagtaagcattcataagctt |
21269731 |
T |
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| Q |
501 |
tttcaattgagtgttcctcttgatcctga |
529 |
Q |
| |
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| T |
21269732 |
tttcaattgagtgttcctcttgatcctga |
21269760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 396 - 527
Target Start/End: Original strand, 21291742 - 21291873
Alignment:
| Q |
396 |
aacctcatcgggagtctgttcagcacggagacgacgcccatcaaagagaaaagcaatggagttgaaatccacagactgacgatcacagtaagcattcata |
495 |
Q |
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||||||||| || ||||| || |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21291742 |
aacctcatctggggtctgctctgcacggaggcgacgcccatcaaatagaaaagcaatggcattgaaatccacagactgacgatcacagtaagcattcata |
21291841 |
T |
|
| Q |
496 |
agctttttcaattgagtgttcctcttgatcct |
527 |
Q |
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| T |
21291842 |
agctttttcagttgagtgttcctcttgatcct |
21291873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 296
Target Start/End: Original strand, 21291418 - 21291656
Alignment:
| Q |
52 |
ccactcataattgtattaacaaaggaagcatcgcccttacaaagtacagctgcaacagctgtatgatatactagtagataatagaagatgcattatatgc |
151 |
Q |
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|||||||||| |||||||||||||| ||||||| ||||||||| ||||| ||| |||||||||||| |||| ||||| ||| |||||| |||||| |
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| T |
21291418 |
ccactcataaccatattaacaaaggaaacatcgcctttacaaagtccagcttcaatggctgtatgatatgctagcagata---gaaaatgcataatatgc |
21291514 |
T |
|
| Q |
152 |
atta--gtctggccctaggtta--aactaattctattcatagttcataatatggcagaagcttcaacacttggttcagacaaccgaacctcctgtctgat |
247 |
Q |
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|||| | || || ||| || | ||||||||||||||||| ||||||||||| | || ||| |||||||||| |||||||||||||||| |
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| T |
21291515 |
attatagcctagcactaagtcacaaactaattctattcata-------atatggcagaaacatcgttgcttctttcagacaacagaacctcctgtctgat |
21291607 |
T |
|
| Q |
248 |
gaagcatggcgtcaatttcatccccatcttccatctccaactgaaacaa |
296 |
Q |
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||||||||||||| ||||| || ||||||||||| |||| ||| ||||| |
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| T |
21291608 |
gaagcatggcgtcgatttcgtctccatcttccatttccagctgcaacaa |
21291656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 505
Target Start/End: Original strand, 2722388 - 2722449
Alignment:
| Q |
444 |
aaaagcaatggagttgaaatccacagactgacgatcacagtaagcattcataagctttttca |
505 |
Q |
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|||| |||| || ||||||||||| || ||| ||| ||||||||||||||| |||||||||| |
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| T |
2722388 |
aaaaccaatcgaattgaaatccactgagtgatgattacagtaagcattcatgagctttttca |
2722449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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