View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6973_low_19 (Length: 533)

Name: NF6973_low_19
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6973_low_19
NF6973_low_19
[»] chr7 (5 HSPs)
chr7 (15-486)||(1874813-1875284)
chr7 (266-486)||(1883795-1884009)
chr7 (40-193)||(1885363-1885515)
chr7 (187-270)||(1884150-1884232)
chr7 (430-476)||(24840436-24840482)
[»] chr2 (3 HSPs)
chr2 (171-270)||(3417815-3417914)
chr2 (285-364)||(3417467-3417546)
chr2 (428-472)||(28738175-28738219)
[»] chr5 (2 HSPs)
chr5 (426-473)||(9868153-9868200)
chr5 (428-486)||(21848722-21848778)
[»] chr1 (1 HSPs)
chr1 (430-479)||(9198996-9199045)


Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 15 - 486
Target Start/End: Complemental strand, 1875284 - 1874813
Alignment:
Q  15 gacatcaggtggttccgacggcggtcgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcnnnnnnntccaat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  1875284 gacatcaggtggttccgacggcggtcgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcaaaaaaatccaat 1875185  T
Q  115 ggtaaggcgctatgtagtggaaattgaaagagaaggtatagctgtttggccatcaccatattcttctgatcctttcttattatgagacttatctttttta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1875184 ggtaaggcgctatgtagtggaaattgaaagagaaggtatagctgtttggccatcaccatattcttctgatcctttcttattatgagacttatctttttta 1875085  T
Q  215 gtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttgttttctacaaatgcatgcattttcgtcgactgaaggattactat 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  1875084 gtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttgttttctacaaatgcatgcattttcgtcgatagaaggattactat 1874985  T
Q  315 ccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattcacctgtgatttcgtcgtgttgtccctatcaaacaacaatgaatcaatgga 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1874984 ccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattcacctgtgatttcgtcgtgttgtccctatcaaacaacaatgaatcaatgga 1874885  T
Q  415 caatatagtagagtcaataatttgattgtttctaccacgtggaaccctaattggtccacatctctgttctga 486  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1874884 caatatagtagagtcaataatttgattgtttctaccacgtggaagcctaattggtccacatctctgttctga 1874813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 266 - 486
Target Start/End: Complemental strand, 1884009 - 1883795
Alignment:
Q  266 ttttgttttctacaaatgcatgcattttcgtcgactgaaggattactatccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattca 365  Q
    |||||||||||||||||||||    ||||||||   |||||| |||||||||||||| ||||| | |||||||||||||||||| | |||||||||||||    
T  1884009 ttttgttttctacaaatgcat----tttcgtcgctagaaggaatactatccgtagagttattatttttgttgttctggtcatggacggttatgtcattca 1883914  T
Q  366 cctgtgatttcgtcgtgttgtccctatcaaacaacaatgaatcaatggacaatatagtagagtcaataatttgattgtttctaccacgtggaaccctaat 465  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||  |||||||||||| |||| |||| ||||||||||||||||||    
T  1883913 cctgtgatttcgtcgcgttgtcgctatcaaacaacaatgaatcaatggacaacatag--gagtcaataattcgattctttccaccacgtggaaccctaat 1883816  T
Q  466 tggtccacatctctgttctga 486  Q
    |||| ||||||||||||||||    
T  1883815 tggttcacatctctgttctga 1883795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 1885515 - 1885363
Alignment:
Q  40 cgatactcgctaaagttaaacgtcatgagaggattttcatttagagaaccttgatcattatcnnnnnnntccaatggtaaggcgctatgtagtggaaatt 139  Q
    ||||| || |||| ||||||||||| || |||||| |||||||||||||||||||||||||        |||||| ||||||| || |||||||||||||    
T  1885515 cgataatcactaatgttaaacgtcacgaaaggattgtcatttagagaaccttgatcattat-aaaaatatccaattgtaaggcactctgtagtggaaatt 1885417  T
Q  140 gaaagagaaggtatagctgtttggccatcaccatattcttctgatcctttctta 193  Q
    |||||||||||||| |||||||||| |||||||||||||||||||| |||||||    
T  1885416 gaaagagaaggtatggctgtttggctatcaccatattcttctgatcatttctta 1885363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 1884232 - 1884150
Alignment:
Q  187 tttcttattatgagacttatcttttttagtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttg 270  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1884232 tttcttattatgagacttat-ttttttagtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttg 1884150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 476
Target Start/End: Complemental strand, 24840482 - 24840436
Alignment:
Q  430 aataatttgattgtttctaccacgtggaaccctaattggtccacatc 476  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||    
T  24840482 aatagtttgattgtttctaccaagtggaaccctaattggtccacatc 24840436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 3417914 - 3417815
Alignment:
Q  171 catattcttctgatcctttcttattatgagacttatcttttttagtggctcgtagttttttattcactcctatgtttgaagtccaatgcatattattttg 270  Q
    |||||||||||||||||||  ||| |||||| || ||||||||||| |||||| |||||| ||||||||| ||||| |||| ||||||||||||||||||    
T  3417914 catattcttctgatccttttctatgatgagatttctcttttttagttgctcgtggtttttgattcactcccatgttagaagaccaatgcatattattttg 3417815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 3417546 - 3417467
Alignment:
Q  285 atgcattttcgtcgactgaaggattactatccgtagagctattaatcttgttgttctggtcatgggcagttatgtcattc 364  Q
    |||||||||||||| | |||||| |||| || |||||||||||| |||||||||||||||||||||| | ||||||||||    
T  3417546 atgcattttcgtcgccagaaggaatactgtctgtagagctattattcttgttgttctggtcatgggcggctatgtcattc 3417467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 28738219 - 28738175
Alignment:
Q  428 tcaataatttgattgtttctaccacgtggaaccctaattggtcca 472  Q
    |||| |||||||||||||  |||||||||||| ||||||||||||    
T  28738219 tcaaaaatttgattgtttacaccacgtggaactctaattggtcca 28738175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 426 - 473
Target Start/End: Original strand, 9868153 - 9868200
Alignment:
Q  426 agtcaataatttgattgtttctaccacgtggaaccctaattggtccac 473  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9868153 agtcaataattcgattgtttctaccacgtggaaccctaattggtccac 9868200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 486
Target Start/End: Original strand, 21848722 - 21848778
Alignment:
Q  428 tcaataatttgattgtttctaccacgtggaaccctaattggtccacatct-ctgttctga 486  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||| |||||||||    
T  21848722 tcaataatttgattgtttctaccac---gaaccctaattggtccacatctcctgttctga 21848778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Original strand, 9198996 - 9199045
Alignment:
Q  430 aataatttgattgtttctaccacgtggaaccctaattggtccacatctct 479  Q
    |||||||  |||||||| |||||||||||||||||| ||||||| |||||    
T  9198996 aataattcaattgtttccaccacgtggaaccctaatcggtccacctctct 9199045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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