View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_20 (Length: 529)
Name: NF6973_low_20
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_20 |
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| [»] scaffold0025 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 252 - 512
Target Start/End: Original strand, 50494417 - 50494676
Alignment:
| Q |
252 |
actatatttgtgaaacatgttgaaggaaagattttgattgtcgatctgtgtgtggacgatttgatatataaagcaaattgtgaagaattatttgaagatt |
351 |
Q |
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| T |
50494417 |
actatatttgtgaaacacgttgaag-aaagatttcaattgtcggtctgtgtgtggacgatttgatatataaagcaaattgtgaagaattgtttgaagatt |
50494515 |
T |
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| Q |
352 |
ttgagtgctccatgaagaagaactttgctatgacagattttgggaaaatgaaatactttcttgaagttgaagtaactcgtaatggaaaaggaattttcat |
451 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50494516 |
ttgagtgctccatgaagaagaactttgctatgacagattttgggaaaatgagatactttcttgaagttgaagtaactcgtaatggaaaaggaattttcat |
50494615 |
T |
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| Q |
452 |
tcatcagcacaagtattctagagaaattttgtctaggtttggaatggaataatgcaacttg |
512 |
Q |
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| T |
50494616 |
tcatcagcacaagtattctagagaaattttgtctaggtttggaatggaataatgcaacttg |
50494676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 50493590 - 50493676
Alignment:
| Q |
172 |
aacaaacatcaagagcatggtatagtaagatttaagtttatttctgtcaagaaaactttgaaaaatgtcatcatgagcatactatat |
258 |
Q |
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| T |
50493590 |
aacaaacaccaagagcatggtatagtaagatttaagtttatttctgtcaagagaactttgaaaaatgtcatcatgagcatactatat |
50493676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 243 - 508
Target Start/End: Original strand, 42971054 - 42971319
Alignment:
| Q |
243 |
catgagcatactatatttgtgaaacatgttgaaggaaagattttgattgtcgatctgtgtgtggacgatttgatatataaagcaaattgtgaagaattat |
342 |
Q |
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| T |
42971054 |
catgagcatactttgtttgtgaaacatgctgaaggaaagtgtttgattgtgagtctgtatgtagatgatctgatatatacaggatattatgaagagttat |
42971153 |
T |
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| Q |
343 |
ttgaagattttgagtgctccatgaagaagaactttgctatgacagattttgggaaaatgaaatactttcttgaagttgaagtaactcgtaatggaaaagg |
442 |
Q |
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|||||| |||| ||| |||||||| | |||| ||||| ||||| ||||| |||| ||| |||||| | | |||||||||| ||| || || |
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| T |
42971154 |
ttgaaggttttatagactctatgaagaaacattttgacatgactgatttggggaagatgaggtaccttcttggattagaagtaactcaagatgccaatgg |
42971253 |
T |
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| Q |
443 |
aattttcattcatcagcacaagtattctagagaaattttgtctaggtttggaatggaataatgcaa |
508 |
Q |
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| T |
42971254 |
aatttttattcatcagcagaaatatgcaagagaaatcttgtccatatttggtatggaagaatgcaa |
42971319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 141 - 411
Target Start/End: Complemental strand, 10781991 - 10781721
Alignment:
| Q |
141 |
tacaagctgagaaaagctttatatgacttgaaacaaacatcaagagcatggtatagtaagatttaagtttatttctgtcaagaaaactttgaaaaatgtc |
240 |
Q |
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|||||| ||| |||||||||||||| || || ||| | ||||||| ||||||||||| ||| ||| ||| ||||||||| |||| |||||||| |||| |
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| T |
10781991 |
tacaagttgaaaaaagctttatatggtttaaagcaagctccaagagcttggtatagtaaaattgaagcttacttctgtcaacaaaagtttgaaaagtgtc |
10781892 |
T |
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| Q |
241 |
atcatgagcatactatatttgtgaaacatgttgaaggaaagattttgattgtcgatctgtgtgtggacgatttgatatataaagcaaattgtgaagaatt |
340 |
Q |
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||||||||||| |||||||||| ||| |||||| || || ||||||||| ||| | ||| || || ||||| | | | |||||||||||| || |
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| T |
10781891 |
cacatgagcatacactatttgtgaagcatactgaagggaaaatattgattgtcagtctatatgtagatgacttgatcttcactggaaattgtgaagagtt |
10781792 |
T |
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| Q |
341 |
atttgaagattttgagtgctccatgaagaagaactttgctatgacagattttgggaaaatgaaatactttc |
411 |
Q |
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| T |
10781791 |
ctttgaagatttcaaatgctccatgaagaagaattttgctatgtcagacttggggaagatgaggtactttc |
10781721 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 23 - 275
Target Start/End: Complemental strand, 59492 - 59240
Alignment:
| Q |
23 |
caagagttggaatgtacattagttagatgtgaatagtgcttttctgcatggagagtaagcagaagatgtgtatatagagcagcctgcaggatatcaacaa |
122 |
Q |
| |
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|||||||||||||||| || | |||||||||||||||||||||||||||| || | | ||| ||||||||||||||||||||| ||| |||||| | |
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| T |
59492 |
caagagttggaatgtatatcaactagatgtgaatagtgcttttctgcatggtgaattaattgaaaatgtgtatatagagcagcctgtagggtatcaaaag |
59393 |
T |
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| Q |
123 |
ggagaaagtagtgaggcgtacaagctgagaaaagctttatatgacttgaaacaaacatcaagagcatggtatagtaagatttaagtttatttctgtcaag |
222 |
Q |
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| || | | ||| |||||| ||| |||| |||||| ||| |||||| ||| || |||||||| |||||| ||| || |||| ||||| |
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| T |
59392 |
gaaggagatgacaaggtatacaagttgaagaaagtactatatggcttaaaacaaggtccaattgcttggtatagaaagattgaagcctacttctatcaag |
59293 |
T |
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| Q |
223 |
aaaactttgaaaaatgtcatcatgagcatactatatttgtgaaacatgttgaa |
275 |
Q |
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|||||||||| ||||||| ||||||||||||| ||||||| |||||| ||||| |
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| T |
59292 |
aaaactttgataaatgtcctcatgagcatactctatttgtaaaacatattgaa |
59240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 59176 - 59127
Alignment:
| Q |
339 |
ttatttgaagattttgagtgctccatgaagaagaactttgctatgacaga |
388 |
Q |
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||||||||||| ||| | ||||| ||||||||||| |||||||||||||| |
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| T |
59176 |
ttatttgaagagtttaaatgctctatgaagaagaattttgctatgacaga |
59127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 159 - 414
Target Start/End: Complemental strand, 46431662 - 46431407
Alignment:
| Q |
159 |
ttatatgacttgaaacaaacatcaagagcatggtatagtaagatttaagtttatttctgtcaagaaaactttgaaaaatgtcatcatgagcatactatat |
258 |
Q |
| |
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||||||| |||||||| || ||||||||||||||||||| || ||| ||| ||||| |||| || ||||| ||||| | |||| | |||||| ||| |
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| T |
46431662 |
ttatatggattgaaacaggcaccaagagcatggtatagtaaaatagaagcttacttctgcaaagagaattttgagaaatgccctcattaacatactttat |
46431563 |
T |
|
| Q |
259 |
ttgtgaaacatgttgaaggaaagattttgattgtcgatctgtgtgtggacgatttgatatataaagcaaattgtgaagaattatttgaagattttgagtg |
358 |
Q |
| |
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|||| || |||| |||| ||||| || ||||| | ||| |||||| ||| ||||||||| | ||||||||||| |||| |||| || || |||| |
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| T |
46431562 |
ttgtaaagcatgctgaaaacaagatcttaattgttagtttgtatgtggatgatctgatatatactggaaattgtgaagtattaattgatgacttcaagtg |
46431463 |
T |
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| Q |
359 |
ctccatgaagaagaactttgctatgacagattttgggaaaatgaaatactttcttg |
414 |
Q |
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|| |||||||| ||||||| ||||| ||||| || ||||||| ||||||||||| |
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| T |
46431462 |
ttctatgaagaaaaactttgtcatgactgatttgggaaaaatgagatactttcttg |
46431407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 426
Target Start/End: Complemental strand, 40610586 - 40610527
Alignment:
| Q |
367 |
agaagaactttgctatgacagattttgggaaaatgaaatactttcttgaagttgaagtaa |
426 |
Q |
| |
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||||||| ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |
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| T |
40610586 |
agaagaattttgctatgacagatttgggaaaaatgagatactttcttgaagtagaagtaa |
40610527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 7849894 - 7849802
Alignment:
| Q |
183 |
agagcatggtatagtaagatttaagtttatttctgtcaagaaaactttgaaaaatgtcatcatgagcatactatatttgtgaaacatgttgaa |
275 |
Q |
| |
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||||| ||||||||||| || ||| ||||||||| ||||||| ||||||||||| | |||||| |||||| | ||||| || ||||||||| |
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| T |
7849894 |
agagcctggtatagtaaaatagaagcttatttctgcaaagaaaattttgaaaaatgccctcatgaacatactctgtttgtaaagcatgttgaa |
7849802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 7850031 - 7849971
Alignment:
| Q |
46 |
tagatgtgaatagtgcttttctgcatggagagtaagcagaagatgtgtatatagagcagcc |
106 |
Q |
| |
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|||||||||| ||||||||||||||||| || | || |||||||||||| | |||||||| |
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|
| T |
7850031 |
tagatgtgaagagtgcttttctgcatggtgaattagtggaagatgtgtatgttgagcagcc |
7849971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 29942951 - 29942859
Alignment:
| Q |
27 |
agttggaatgtacattagttagatgtgaatagtgcttttctgcatggagagtaagcagaagatgtgtatatagagcagcctgcaggatatcaa |
119 |
Q |
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|||||||||||| || | |||||||||| |||||||| ||||||| ||| | | || |||||||||||||||||| |||||| |||||| |
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| T |
29942951 |
agttggaatgtatataaactagatgtgaagagtgctttcttgcatggtgagctaactgagaatgtgtatatagagcagcttgcagggtatcaa |
29942859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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