View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_24 (Length: 492)
Name: NF6973_low_24
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 10 - 482
Target Start/End: Original strand, 1123794 - 1124266
Alignment:
| Q |
10 |
atggacatcatgaggccatttgcagaatctgttttgagtgggtgagtcatttgnnnnnnnnnnnnnncttnnnnnnncaaattattagtatcttcttcat |
109 |
Q |
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| T |
1123794 |
atggacataatgaagccatttgcagaatctgttttgagtgggtgagtcatttgttttttctttttttcttaaaaaaacaaattattagtatcttcttcat |
1123893 |
T |
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| Q |
110 |
tgcttgtttcacctatggctgacatgaggtggacttcccaggtttattaatagaggaccatcagtaaatgatagatgggtttttgattccccagtccatt |
209 |
Q |
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| T |
1123894 |
tgcttgtttcacctatggctgacatgaggttgacttcccaggtttattaatagaggaccatcagtaaatgatagatgggtttttgattccccagtccatt |
1123993 |
T |
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| Q |
210 |
ctaacgttgaagctaagctgaggcaacttttaattgatctggcaaataatgataaaatacttggaatccaggtgcatgtgacttttgttttcctaatgcg |
309 |
Q |
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| T |
1123994 |
ctaacgttgaagctaagctgaggcaacttttaattgagctggcaaataatgataaaatacttggaatccaggtgcatgtgacttttgttttcctaatgcg |
1124093 |
T |
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| Q |
310 |
tttataattattaattacctttccttatgaccaccggctaggtttttctacgctagactacaccagggttgtatatcaggaatttacttatatgatttgg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1124094 |
tttataattattaattacctttccttatgaccaccggctaggtttttctacactagactacaccagggttgtatatcaggaatttacttatatgatttgg |
1124193 |
T |
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| Q |
410 |
ttgaaaattatgaaagtcattaagtatttcagattttcacatataatgtagctgccattgcatttgatgtcca |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1124194 |
ttgaaaattatgaaagtcattaagtatttcagattttcacatataatgtagctgccattgcatttgatgtcca |
1124266 |
T |
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