View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6973_low_26 (Length: 463)
Name: NF6973_low_26
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 30881592 - 30881835
Alignment:
| Q |
14 |
gacatcaccgggaaagaacttcgatgacaattggggttgctagaaggatttagtttagagcatcgatccccaatctctgctgtaattgtagctaaatatt |
113 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30881592 |
gacatcaccggaaaagaacttcgatgacaattggggttgctagaaagatttagtttagagcatcgatccccaatctctgctgtaattgtagctaaataat |
30881691 |
T |
|
| Q |
114 |
gttgagcttatttccagtgtcatggtgataaatgcatgtataatcaatgtttcgtcaattttttaatttgatcccaaaacaagttttgtggttgttaaga |
213 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30881692 |
gttgagcttatttccagtgtcgtggtgataaatgcatgtacaatcaatgtttcgtcaattttttaatttgatcccaaaacaagttttgtggttgttaaga |
30881791 |
T |
|
| Q |
214 |
acgacgttatattttcctctaataaagaagacattatattttgt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30881792 |
acgacgttatattttcctctaataaagaagacattatattttgt |
30881835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 282 - 448
Target Start/End: Original strand, 30881854 - 30882020
Alignment:
| Q |
282 |
ttagatgaaatataggatgaaaatatgtgcttaagcattgggtagttctcaccttaccagttgattttgtaggattgaattagactcaatctaaattcta |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
30881854 |
ttagatgaaatataggatgaaaatatgtgcttaagcattgggtagttctcaccttaccaattgatttcgtaggattgaattagactcgatctaaattcta |
30881953 |
T |
|
| Q |
382 |
caatgatttcaaagtctattcaagatccattggatcatcctctattaggccatactctagatgtcca |
448 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30881954 |
cgatgatttcaaagtctattcaagatccattggatcatcctctattaggccatactctagatgtcca |
30882020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University