View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_27 (Length: 461)
Name: NF6973_low_27
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 154 - 298
Target Start/End: Original strand, 37372290 - 37372435
Alignment:
| Q |
154 |
gtggagatttaggaaaactacaagagaaaatattataaaa-ttttagagattgatgagttcgagaatgatgtgatatatgacataatattatagtgtcat |
252 |
Q |
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| T |
37372290 |
gtggagatttaggaaaactacaagagaaattattataaaagttttagagattgatgagttcgagagtgatgtgatatatgacataatattatagtgttat |
37372389 |
T |
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| Q |
253 |
ttgattcatgtaaccaatctcacttaatagaatgaaatttgataat |
298 |
Q |
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| T |
37372390 |
ttgattcatgtaaccaatctcacttaatagaataaaatttgataat |
37372435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 37372175 - 37372304
Alignment:
| Q |
8 |
atgagatggacatcactcaagaccgcaccaaaataatgttatgtacatacaaaacctataaattttgcattaaggaaataaatgagatggatggtagtca |
107 |
Q |
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| T |
37372175 |
atgacatggacctcactcaagaccgcaccaaaataatgttatgtacatacaagacctataaattttgcattaaggaaataaatgagatggatggttgtca |
37372274 |
T |
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| Q |
108 |
aattaacagtggcaagtggagatttaggaa |
137 |
Q |
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| T |
37372275 |
aattactagtggcaagtggagatttaggaa |
37372304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 290 - 461
Target Start/End: Original strand, 37372905 - 37373084
Alignment:
| Q |
290 |
tttgataattgattgttggcatggatagaaaaactaaacataaaggannnnnnnnnaagtttattaga---------ggaaataacttttgattaaatct |
380 |
Q |
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| T |
37372905 |
tttgataattgattgttggcatggatagaaaaactaaacataaagga-ttttttttaagtttattaaatttattatcggaaataacttttgattaaatct |
37373003 |
T |
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| Q |
381 |
gtattcctaaatgctttttnnnnnnngatgcttgattaacatttactccatattattctgataagttactttaagagaaat |
461 |
Q |
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| T |
37373004 |
gtattcctagatgctttttaaaaaaatatgcttgattaacatttactccatattattctgatgagttacattaagagaaat |
37373084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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