View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_3 (Length: 1053)
Name: NF6973_low_3
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 614 - 1050
Target Start/End: Complemental strand, 28173677 - 28173234
Alignment:
| Q |
614 |
tattcctactaatctggctagaaaaatgcataaaaagtgaatgc------tggtaattaataacggaaacaagtcataacaaaactaaaa-gaatatatt |
706 |
Q |
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| T |
28173677 |
tattcctactaatctggctagaaaaatgcatgaaaagtgaatgcgaatgcttgtaattaataacggaaacaagtcataacaaaactaaaaagaatatatt |
28173578 |
T |
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| Q |
707 |
tacaagtatgtaaaacatacagacatcacaactaaccattggcttctgcaatcaaccatacaaaggtacacctatactaacacgaaattcagatgataca |
806 |
Q |
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| T |
28173577 |
tacaagtatgtaaaacatacagacatcacaactaaccattggcttctgcaatcaaccatacaaaggtacacctatactaacacgtaattcagatgataca |
28173478 |
T |
|
| Q |
807 |
agaaagtttgatacaaatacaagaaaatcacaaatatagttgcttgcactgtgctgcatcaatatcaaagggacaatacgggcacttaaatacttttgtg |
906 |
Q |
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| T |
28173477 |
agaaagtttgatacaaatacaagaaaatcacaaatatagttgcttgcactgtgctgcatcaatatcaaagggacaatacgggcacttaaatacttttgtg |
28173378 |
T |
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| Q |
907 |
ctattcttggacattttcaagatagactgcttacagaggacatggccacaggacatcaacattggagggttctcctcagttgcttgttcctttgagacag |
1006 |
Q |
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| T |
28173377 |
ctattcttggacattttcaagatagactgcttacagaggacatggccacaggacatcaacattggagggttctcctcagttgcttgttcctttgagacag |
28173278 |
T |
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| Q |
1007 |
gacaaacaaaaacagaatggaactggaatttgatgtccatctca |
1050 |
Q |
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| T |
28173277 |
gacaaacaaaaacagaatggaactggaattcgctgtccatctca |
28173234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 394
Target Start/End: Complemental strand, 28175187 - 28174802
Alignment:
| Q |
9 |
ggacatcacattcaaatgtggtcttatgattggttgttgtgatttagtcattgtaatatacaaaaacaaatgtcaaatccatatttttaagaaatatcgt |
108 |
Q |
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| T |
28175187 |
ggacatcacattcaaatgtggtcttatgattggttgttgtgatttagtcattgtaatatacaaaaacaaatgtcaaacccatgtttttaagaaatatcgt |
28175088 |
T |
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| Q |
109 |
ggattctcatgaatgacatgtttttggtgaaaatgttgaggaatgagaagtgtagatgcttttgaaaaagaaaatactatttcacgaaaaaatctatcac |
208 |
Q |
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| T |
28175087 |
ggattctcatgaatgacatgtttttggtgaaaatgttgaggaatgagaagtgtggatgcttttgaaaaagaaaatactatttcacgaaaaaatctatcac |
28174988 |
T |
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| Q |
209 |
agaaatttcacgattattgaattgtaactgtatctgcaacgcaagctaatgggagattcaacaatcaaaagcgatttgtgattagtttgttataccaata |
308 |
Q |
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| T |
28174987 |
agaaatttcacgattgttgaattgtaactgtaactgcaacgcaagctaatgggagattcaacaatcaaaagcgatttgtgattagtttgttataccaata |
28174888 |
T |
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| Q |
309 |
tttgctttataaagcattgctcttgagaaatgttagaaatgtaatttgattttgacatgcatcaatgttctcaaacatgaacattg |
394 |
Q |
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| T |
28174887 |
tttgctttatatagcattgctcttgagaaatgttagaaatgtaatttgattttgacatgcatcaatgttctcaaacatgaacattg |
28174802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 463 - 622
Target Start/End: Complemental strand, 28174733 - 28174568
Alignment:
| Q |
463 |
gttcaattcatttagctcatttaaattcccaactcaacttctgttgctgcataaacaatgacttatccttttaagaggatcacaacgtgacatgagcatt |
562 |
Q |
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| T |
28174733 |
gttcaattcatttagctcatttaaattctcaactcaacttctgttgctgcataaacaagcacttatccttttaagaggatcacaacgtgacatgagcatc |
28174634 |
T |
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| Q |
563 |
tgtttctcttccagaaagtggtaaat------atgtataaacataaaatagtggttatattcctac |
622 |
Q |
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| T |
28174633 |
tgtttctcttccagaaagtggtaaatatgaacatgtataaacataaaatagtggttatattcctac |
28174568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 7e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 817 - 1004
Target Start/End: Complemental strand, 19789081 - 19788894
Alignment:
| Q |
817 |
atacaaatacaagaaaatcacaaatatagttgcttgcactgtgctgcatcaatatcaaagggacaatacgggcacttaaatacttttgtgctattcttgg |
916 |
Q |
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|||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| ||| |||||| ||| ||| |
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| T |
19789081 |
atacaaatccatgaaaatcacaaacatagttgcatgcactgtgctgcatcaatatcaaagggacaatatgggaacttaaacgcttctgtgctgttcatgg |
19788982 |
T |
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| Q |
917 |
acattttcaagatagactgcttacagaggacatggccacaggacatcaacattggagggttctcctcagttgcttgttcctttgagac |
1004 |
Q |
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| T |
19788981 |
acattttcaagatagactgatcacagaggacatggccacaggacaacaacattggatggttatcctcagttgcttgttccttcgagac |
19788894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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