View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6973_low_35 (Length: 413)

Name: NF6973_low_35
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6973_low_35
NF6973_low_35
[»] chr3 (3 HSPs)
chr3 (12-368)||(798453-798800)
chr3 (263-366)||(25034956-25035059)
chr3 (243-365)||(44119095-44119218)
[»] chr7 (4 HSPs)
chr7 (256-366)||(7395288-7395398)
chr7 (263-361)||(19417738-19417836)
chr7 (307-362)||(29020804-29020859)
chr7 (268-333)||(27129079-27129144)
[»] chr4 (1 HSPs)
chr4 (263-352)||(10583607-10583696)
[»] chr2 (1 HSPs)
chr2 (239-358)||(15583100-15583220)
[»] chr1 (1 HSPs)
chr1 (272-366)||(20618151-20618244)
[»] scaffold0669 (1 HSPs)
scaffold0669 (255-359)||(4929-5034)
[»] chr5 (1 HSPs)
chr5 (255-362)||(18222032-18222139)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 368
Target Start/End: Original strand, 798453 - 798800
Alignment:
Q  12 aagaaggcttgcttagaaaattttacataacagaacataaactttgtttaacaagcgaaaatcaatctaatttgacgcattccccatcaacgccatcatt 111  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  798453 aagaaggcttgcttagaaaattttacagaacagaacataagctttgtttaacaagcgaaaatcaatctaatttgacgcattccccatcaacgccatcatt 798552  T
Q  112 ttgataaaaaataatttatgactttcctcgtacaggttctctctaattcagccataaatctagatccagtcataaatctataaacaaactcgtaatacat 211  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||    
T  798553 ttgataaaaaatgatttatgattttcctcgtacaggttctctctaattcagccataaatccagatccaatcataaatctataaacagactcgtaatacat 798652  T
Q  212 gtcctctctcattcttaactttaacagcatctaatcccaacacaaagagattttagttatccatgatatgcataactaacataagagacatcatagatgt 311  Q
    || ||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||         ||||||||||||||||||||||||||||||    
T  798653 gttctctctcattcttaactttaacaacatccaatcccaacacaaggagattttagttatc---------cataactaacataagagacatcatagatgt 798743  T
Q  312 tggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtgactcct 368  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  798744 tggcgaagcatcaacaaacttgattccaagcttcctagccctccaatggtgactcct 798800  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 25035059 - 25034956
Alignment:
Q  263 tttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtg 362  Q
    ||||||||||||| | |||||||||||||||| ||||  | ||||||||||||||||||||||||| ||||||||||| ||||||   ||||||||||||    
T  25035059 tttagttatccataaaatgcataactaacataggagagttgatagatgttggagaagcatcaacaagcttgattccaatcttcctaaacctccaatggtg 25034960  T
Q  363 actc 366  Q
    ||||    
T  25034959 actc 25034956  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 243 - 365
Target Start/End: Complemental strand, 44119218 - 44119095
Alignment:
Q  243 taatcccaacacaaa-gagattttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaag 341  Q
    ||||||||||||||| |||| ||||||||  |||| |||| |||||||||||||||||  | ||||||||| | ||||| ||||||| ||||||| ||||    
T  44119218 taatcccaacacaaaagagagtttagttactcatgctatgaataactaacataagagagttgatagatgtttgtgaagcgtcaacaagcttgatttcaag 44119119  T
Q  342 cttccttgccctccaatggtgact 365  Q
    |||||| |||||||||||||||||    
T  44119118 cttcctagccctccaatggtgact 44119095  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 366
Target Start/End: Original strand, 7395288 - 7395398
Alignment:
Q  256 aagagattttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctcc 355  Q
    |||||| |||||||| |||||||||  | ||| |||||||||||  | |||| |||||||||||||||||||| |||||||||||| ||||| ||||| |    
T  7395288 aagagagtttagttacccatgatatatagaacgaacataagagagttgatagctgttggagaagcatcaacaagcttgattccaagattcctagcccttc 7395387  T
Q  356 aatggtgactc 366  Q
    |||||||||||    
T  7395388 aatggtgactc 7395398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 361
Target Start/End: Original strand, 19417738 - 19417836
Alignment:
Q  263 tttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggt 361  Q
    |||||||| |||| | ||| |||||||| ||||||||  | |||||||||||||| |||||||||| ||||| |||||||||  | ||||| |||||||    
T  19417738 tttagttacccataagatgtataactaatataagagagttgatagatgttggagatgcatcaacaagcttgaatccaagcttattagcccttcaatggt 19417836  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 29020804 - 29020859
Alignment:
Q  307 gatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtg 362  Q
    |||||| ||||||||| ||||| ||||  |||||||||||| ||||||||||||||    
T  29020804 gatgtttgagaagcatgaacaagcttgtctccaagcttcctagccctccaatggtg 29020859  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 27129079 - 27129144
Alignment:
Q  268 ttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttg 333  Q
    |||||||||| | |||||||||||| || |||  | ||||||||||  ||||||||||||||||||    
T  27129079 ttatccatgagaagcataactaacacaaaagagttgatagatgttgaggaagcatcaacaaacttg 27129144  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 352
Target Start/End: Complemental strand, 10583696 - 10583607
Alignment:
Q  263 tttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccc 352  Q
    ||||| || |||||||||||||||||||||||||| |  | |||||| |||||||||||||| ||| |||||||||||||||||| ||||    
T  10583696 tttagatacccatgatatgcataactaacataagatagttgatagatattggagaagcatcaccaagcttgattccaagcttcctagccc 10583607  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 358
Target Start/End: Original strand, 15583100 - 15583220
Alignment:
Q  239 catctaatcccaacacaaa-gagattttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattc 337  Q
    ||||||||| ||||||||| |||| |||||||| | |||| ||| |||||||||| ||||    | |||||||||||| ||||||||||||  | || ||    
T  15583100 catctaatctcaacacaaaagagagtttagttaccaatgaaatgtataactaacaaaagaaggttgatagatgttggataagcatcaacaagttggaatc 15583199  T
Q  338 caagcttccttgccctccaat 358  Q
    |||||||||| ||||||||||    
T  15583200 caagcttcctagccctccaat 15583220  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 366
Target Start/End: Original strand, 20618151 - 20618244
Alignment:
Q  272 ccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtgactc 366  Q
    |||||||||||||||||||||| |||||  | |||||||||||||||||||   |||  |||||||||| |||||| ||||| ||||| ||||||    
T  20618151 ccatgatatgcataactaacat-agagagttgatagatgttggagaagcattgccaatattgattccaatcttcctagcccttcaatgatgactc 20618244  T

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Target: scaffold0669 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 4929 - 5034
Alignment:
Q  255 aaagagattttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagc-ttccttgccct 353  Q
    ||||||| ||||||||||||||| |||||| |||||||   ||||  | ||  ||||||||||||||||||||| ||||  ||||||| ||||| |||||    
T  4929 aaagagagtttagttatccatgagatgcatgactaacaagggagaattgatgaatgttggagaagcatcaacaagcttgtctccaagctttcctagccct 5028  T
Q  354 ccaatg 359  Q
    ||||||    
T  5029 ccaatg 5034  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 362
Target Start/End: Original strand, 18222032 - 18222139
Alignment:
Q  255 aaagagattttagttatccatgatatgcataactaacataagagacat-catagatgttggagaagcatcaacaaacttgattccaagcttccttgccct 353  Q
    ||||||| |||||||| |||||  || ||||||||||| |||| |||| ||||||||||||||||||||||| |  ||||| | |||||||| |  ||||    
T  18222032 aaagagagtttagttacccatggaattcataactaacaaaaga-acattcatagatgttggagaagcatcaatatgcttgaatacaagcttcatatccct 18222130  T
Q  354 ccaatggtg 362  Q
    || ||||||    
T  18222131 cctatggtg 18222139  T

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