View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6973_low_36 (Length: 413)

Name: NF6973_low_36
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6973_low_36
NF6973_low_36
[»] chr3 (5 HSPs)
chr3 (209-404)||(47678819-47679014)
chr3 (1-139)||(47679084-47679222)
chr3 (331-362)||(1502594-1502625)
chr3 (329-362)||(19730215-19730248)
chr3 (329-362)||(19750805-19750838)
[»] chr7 (8 HSPs)
chr7 (326-362)||(10893872-10893908)
chr7 (331-369)||(6824230-6824268)
chr7 (327-362)||(10893351-10893386)
chr7 (326-363)||(1745184-1745221)
chr7 (333-362)||(18750896-18750925)
chr7 (326-362)||(31837771-31837807)
chr7 (330-362)||(44172897-44172929)
chr7 (331-363)||(46550799-46550831)
[»] chr5 (6 HSPs)
chr5 (326-359)||(29200802-29200835)
chr5 (325-355)||(29200962-29200992)
chr5 (327-371)||(39651229-39651274)
chr5 (334-362)||(645352-645380)
chr5 (331-363)||(27253304-27253336)
chr5 (326-362)||(28322261-28322297)
[»] chr1 (9 HSPs)
chr1 (326-363)||(50195468-50195505)
chr1 (321-363)||(36041368-36041408)
chr1 (334-363)||(23621067-23621096)
chr1 (334-363)||(23652412-23652441)
chr1 (334-363)||(23737846-23737875)
chr1 (326-363)||(26777380-26777417)
chr1 (327-363)||(24701104-24701140)
chr1 (326-362)||(31667445-31667481)
chr1 (331-359)||(32637858-32637886)
[»] chr6 (5 HSPs)
chr6 (331-371)||(34547214-34547254)
chr6 (330-362)||(6284668-6284700)
chr6 (326-362)||(10335379-10335415)
chr6 (323-363)||(19343518-19343558)
chr6 (326-362)||(34057974-34058010)
[»] chr4 (18 HSPs)
chr4 (327-367)||(55286732-55286772)
chr4 (331-362)||(683072-683103)
chr4 (331-362)||(9988707-9988738)
chr4 (325-363)||(10435081-10435119)
chr4 (325-355)||(12650900-12650930)
chr4 (329-363)||(45267888-45267922)
chr4 (334-363)||(1336654-1336683)
chr4 (326-355)||(12651061-12651090)
chr4 (326-363)||(31901280-31901317)
chr4 (333-362)||(46632847-46632876)
chr4 (334-362)||(8457945-8457973)
chr4 (326-362)||(13307897-13307933)
chr4 (331-359)||(19262932-19262960)
chr4 (331-363)||(21732368-21732400)
chr4 (327-371)||(24445386-24445430)
chr4 (326-354)||(30075647-30075675)
chr4 (326-362)||(44362686-44362722)
chr4 (321-353)||(50699199-50699231)
[»] chr8 (7 HSPs)
chr8 (331-362)||(32691763-32691794)
chr8 (326-363)||(10002166-10002203)
chr8 (331-363)||(1586627-1586659)
chr8 (326-362)||(31548296-31548332)
chr8 (326-362)||(31681833-31681869)
chr8 (330-362)||(33684891-33684923)
chr8 (327-371)||(35871185-35871229)
[»] scaffold0206 (1 HSPs)
scaffold0206 (326-363)||(9460-9497)
[»] chr2 (2 HSPs)
chr2 (330-362)||(22305568-22305600)
chr2 (339-371)||(44605423-44605455)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 209 - 404
Target Start/End: Complemental strand, 47679014 - 47678819
Alignment:
Q  209 aaatcatcattaccataaacaacataaaaatccaaaaatattggtaaaataactcggaagcaccaacgcttatgatagaaggtgtgtctggtgctagaca 308  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47679014 aaatcatcattaccataaacaacataaaaatccaaaaatagtggtaaaataactcggaagcaccaacgcttatgatagaaggtgtgtctggtgctagaca 47678915  T
Q  309 ttgtgtccaaactccagcaccaacacatgtgattacattcaattatgtcatttttcgaattataagcagtatcagcgtgtaggtgtctgatgtcca 404  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47678914 ctgtgtccaaactccagcaccaacacatatgattacattcaattatgtcatttttcgaattataagcagtatcagcgtgtaggtgtctggtgtcca 47678819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 47679222 - 47679084
Alignment:
Q  1 taaatattcgatactgtttaaactacagcagcatcgtatatatcgaatttaaattacctcaggtgcccacctgcgtacaaaataaggatcaacactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47679222 taaatattcgatactgtttaaactacagcagcatcgtatatatcgaatttaaattacctcaggtgcccacctgcgtacaaaataaggatcaacactctct 47679123  T
Q  101 ggatcattgttcgaaccagaacctcgagaaacctgcgtg 139  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  47679122 ggatcattgttcgaaccagaaactcgagaaacctgcgtg 47679084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 362
Target Start/End: Complemental strand, 1502625 - 1502594
Alignment:
Q  331 acacatgtgattacattcaattatgtcatttt 362  Q
    ||||||||||||||||||||||||||||||||    
T  1502625 acacatgtgattacattcaattatgtcatttt 1502594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 362
Target Start/End: Original strand, 19730215 - 19730248
Alignment:
Q  329 caacacatgtgattacattcaattatgtcatttt 362  Q
    ||||||||||||| ||||||||||||||||||||    
T  19730215 caacacatgtgatcacattcaattatgtcatttt 19730248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 362
Target Start/End: Original strand, 19750805 - 19750838
Alignment:
Q  329 caacacatgtgattacattcaattatgtcatttt 362  Q
    ||||||||||||| ||||||||||||||||||||    
T  19750805 caacacatgtgatcacattcaattatgtcatttt 19750838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 10893872 - 10893908
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcatttt 362  Q
    |||||||||||||||||||||||||||||||||||||    
T  10893872 caccaacacatgtgattacattcaattatgtcatttt 10893908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 369
Target Start/End: Complemental strand, 6824268 - 6824230
Alignment:
Q  331 acacatgtgattacattcaattatgtcatttttcgaatt 369  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  6824268 acacatgtgattacattcaattatgtcatttttcaaatt 6824230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 10893351 - 10893386
Alignment:
Q  327 accaacacatgtgattacattcaattatgtcatttt 362  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10893351 accaacacatgcgattacattcaattatgtcatttt 10893386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 1745221 - 1745184
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcattttt 363  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  1745221 caccaacacatgtgattccattcaattatgccattttt 1745184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 362
Target Start/End: Complemental strand, 18750925 - 18750896
Alignment:
Q  333 acatgtgattacattcaattatgtcatttt 362  Q
    ||||||||||||||||||||||||||||||    
T  18750925 acatgtgattacattcaattatgtcatttt 18750896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 31837807 - 31837771
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcatttt 362  Q
    |||||||||||| |||||||||||||||| |||||||    
T  31837807 caccaacacatgagattacattcaattatttcatttt 31837771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 362
Target Start/End: Original strand, 44172897 - 44172929
Alignment:
Q  330 aacacatgtgattacattcaattatgtcatttt 362  Q
    |||||||||||||||||| ||||||||||||||    
T  44172897 aacacatgtgattacattgaattatgtcatttt 44172929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 46550799 - 46550831
Alignment:
Q  331 acacatgtgattacattcaattatgtcattttt 363  Q
    ||||||||||||||| |||||||||||||||||    
T  46550799 acacatgtgattacactcaattatgtcattttt 46550831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 359
Target Start/End: Original strand, 29200802 - 29200835
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcat 359  Q
    ||||||||||||||||||||||||||||||||||    
T  29200802 caccaacacatgtgattacattcaattatgtcat 29200835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 355
Target Start/End: Original strand, 29200962 - 29200992
Alignment:
Q  325 gcaccaacacatgtgattacattcaattatg 355  Q
    |||||||||||||||||||||||||||||||    
T  29200962 gcaccaacacatgtgattacattcaattatg 29200992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 39651274 - 39651229
Alignment:
Q  327 accaacacatgtgattacattcaattatgtcattttt-cgaattat 371  Q
    ||||||||| ||||||||||| ||||||||||||||| ||||||||    
T  39651274 accaacacacgtgattacattgaattatgtcatttttacgaattat 39651229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 362
Target Start/End: Complemental strand, 645380 - 645352
Alignment:
Q  334 catgtgattacattcaattatgtcatttt 362  Q
    |||||||||||||||||||||||||||||    
T  645380 catgtgattacattcaattatgtcatttt 645352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 27253336 - 27253304
Alignment:
Q  331 acacatgtgattacattcaattatgtcattttt 363  Q
    ||||||||||||||||||||||||| |||||||    
T  27253336 acacatgtgattacattcaattatgacattttt 27253304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 28322297 - 28322261
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcatttt 362  Q
    ||||||||||||||||||||||||||||  |||||||    
T  28322297 caccaacacatgtgattacattcaattaattcatttt 28322261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 50195468 - 50195505
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcattttt 363  Q
    |||| |||||||||||||||||||||||||||||||||    
T  50195468 caccgacacatgtgattacattcaattatgtcattttt 50195505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 36041408 - 36041368
Alignment:
Q  321 tccagcaccaacacatgtgattacattcaattatgtcattttt 363  Q
    |||||||||||||  ||||||||||||||||||||||||||||    
T  36041408 tccagcaccaaca--tgtgattacattcaattatgtcattttt 36041368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 363
Target Start/End: Original strand, 23621067 - 23621096
Alignment:
Q  334 catgtgattacattcaattatgtcattttt 363  Q
    ||||||||||||||||||||||||||||||    
T  23621067 catgtgattacattcaattatgtcattttt 23621096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 363
Target Start/End: Original strand, 23652412 - 23652441
Alignment:
Q  334 catgtgattacattcaattatgtcattttt 363  Q
    ||||||||||||||||||||||||||||||    
T  23652412 catgtgattacattcaattatgtcattttt 23652441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 363
Target Start/End: Original strand, 23737846 - 23737875
Alignment:
Q  334 catgtgattacattcaattatgtcattttt 363  Q
    ||||||||||||||||||||||||||||||    
T  23737846 catgtgattacattcaattatgtcattttt 23737875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 26777380 - 26777417
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcattttt 363  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  26777380 cacccacacatgtgattacattcaattaagtcattttt 26777417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 24701104 - 24701140
Alignment:
Q  327 accaacacatgtgattacattcaattatgtcattttt 363  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  24701104 accaacagatgcgattacattcaattatgtcattttt 24701140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 31667481 - 31667445
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcatttt 362  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  31667481 caccgacacatgtgattacatttaattatgtcatttt 31667445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 359
Target Start/End: Complemental strand, 32637886 - 32637858
Alignment:
Q  331 acacatgtgattacattcaattatgtcat 359  Q
    |||||||||||||||||||||||||||||    
T  32637886 acacatgtgattacattcaattatgtcat 32637858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 371
Target Start/End: Original strand, 34547214 - 34547254
Alignment:
Q  331 acacatgtgattacattcaattatgtcatttttcgaattat 371  Q
    ||||||||||||||||| |||||||||||||||| ||||||    
T  34547214 acacatgtgattacattaaattatgtcatttttcaaattat 34547254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 362
Target Start/End: Original strand, 6284668 - 6284700
Alignment:
Q  330 aacacatgtgattacattcaattatgtcatttt 362  Q
    |||||||||||||| ||||||||||||||||||    
T  6284668 aacacatgtgattaaattcaattatgtcatttt 6284700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 10335379 - 10335415
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcatttt 362  Q
    |||| |||||| |||||||||||||||||||||||||    
T  10335379 caccgacacatctgattacattcaattatgtcatttt 10335415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 19343518 - 19343558
Alignment:
Q  323 cagcaccaacacatgtgattacattcaattatgtcattttt 363  Q
    ||||||||||||||||||||||||| ||| |||||| ||||    
T  19343518 cagcaccaacacatgtgattacattgaatcatgtcactttt 19343558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 34058010 - 34057974
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcatttt 362  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  34058010 caccgacacatgtgattacagtcaattatgtcatttt 34057974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 55286732 - 55286772
Alignment:
Q  327 accaacacatgtgattacattcaattatgtcatttttcgaa 367  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  55286732 accaacacatgtgatcacattcaattatgtcaattttcgaa 55286772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 362
Target Start/End: Complemental strand, 683103 - 683072
Alignment:
Q  331 acacatgtgattacattcaattatgtcatttt 362  Q
    ||||||||||||||||||||||||||||||||    
T  683103 acacatgtgattacattcaattatgtcatttt 683072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 362
Target Start/End: Original strand, 9988707 - 9988738
Alignment:
Q  331 acacatgtgattacattcaattatgtcatttt 362  Q
    ||||||||||||||||||||||||||||||||    
T  9988707 acacatgtgattacattcaattatgtcatttt 9988738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 363
Target Start/End: Original strand, 10435081 - 10435119
Alignment:
Q  325 gcaccaacacatgtgattacattcaattatgtcattttt 363  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  10435081 gcacctacacatgtgattacattcaattttgtcattttt 10435119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 355
Target Start/End: Complemental strand, 12650930 - 12650900
Alignment:
Q  325 gcaccaacacatgtgattacattcaattatg 355  Q
    |||||||||||||||||||||||||||||||    
T  12650930 gcaccaacacatgtgattacattcaattatg 12650900  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 45267922 - 45267888
Alignment:
Q  329 caacacatgtgattacattcaattatgtcattttt 363  Q
    |||||||| ||||||||||||||||||||||||||    
T  45267922 caacacatatgattacattcaattatgtcattttt 45267888  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 363
Target Start/End: Original strand, 1336654 - 1336683
Alignment:
Q  334 catgtgattacattcaattatgtcattttt 363  Q
    ||||||||||||||||||||||||||||||    
T  1336654 catgtgattacattcaattatgtcattttt 1336683  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 355
Target Start/End: Complemental strand, 12651090 - 12651061
Alignment:
Q  326 caccaacacatgtgattacattcaattatg 355  Q
    ||||||||||||||||||||||||||||||    
T  12651090 caccaacacatgtgattacattcaattatg 12651061  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 31901280 - 31901317
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcattttt 363  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  31901280 caccagcacatgtgattacattcaattatgccattttt 31901317  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 362
Target Start/End: Original strand, 46632847 - 46632876
Alignment:
Q  333 acatgtgattacattcaattatgtcatttt 362  Q
    ||||||||||||||||||||||||||||||    
T  46632847 acatgtgattacattcaattatgtcatttt 46632876  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 362
Target Start/End: Complemental strand, 8457973 - 8457945
Alignment:
Q  334 catgtgattacattcaattatgtcatttt 362  Q
    |||||||||||||||||||||||||||||    
T  8457973 catgtgattacattcaattatgtcatttt 8457945  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 13307933 - 13307897
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcatttt 362  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  13307933 caccaacacttgtgattacattgaattatgtcatttt 13307897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 359
Target Start/End: Original strand, 19262932 - 19262960
Alignment:
Q  331 acacatgtgattacattcaattatgtcat 359  Q
    |||||||||||||||||||||||||||||    
T  19262932 acacatgtgattacattcaattatgtcat 19262960  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 21732368 - 21732400
Alignment:
Q  331 acacatgtgattacattcaattatgtcattttt 363  Q
    ||||||||||||||| |||||||||||||||||    
T  21732368 acacatgtgattacaatcaattatgtcattttt 21732400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 24445386 - 24445430
Alignment:
Q  327 accaacacatgtgattacattcaattatgtcatttttcgaattat 371  Q
    |||||||||||||||||||||||||||  | ||||||| ||||||    
T  24445386 accaacacatgtgattacattcaattactttatttttcaaattat 24445430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 30075647 - 30075675
Alignment:
Q  326 caccaacacatgtgattacattcaattat 354  Q
    |||||||||||||||||||||||||||||    
T  30075647 caccaacacatgtgattacattcaattat 30075675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 44362722 - 44362686
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcatttt 362  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  44362722 caccaacacttgtgattacattaaattatgtcatttt 44362686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 50699231 - 50699199
Alignment:
Q  321 tccagcaccaacacatgtgattacattcaatta 353  Q
    |||| ||||||||||||||||||||||||||||    
T  50699231 tccaacaccaacacatgtgattacattcaatta 50699199  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 362
Target Start/End: Complemental strand, 32691794 - 32691763
Alignment:
Q  331 acacatgtgattacattcaattatgtcatttt 362  Q
    ||||||||||||||||||||||||||||||||    
T  32691794 acacatgtgattacattcaattatgtcatttt 32691763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 10002166 - 10002203
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcattttt 363  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  10002166 caccgacacatgtgattacattaaattatgtcattttt 10002203  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 1586659 - 1586627
Alignment:
Q  331 acacatgtgattacattcaattatgtcattttt 363  Q
    |||||||||||||| ||||||||||||||||||    
T  1586659 acacatgtgattacgttcaattatgtcattttt 1586627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 31548296 - 31548332
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcatttt 362  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  31548296 caccgacacatgtgattacattgaattatgtcatttt 31548332  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 31681833 - 31681869
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcatttt 362  Q
    |||| |||||||||||| |||||||||||||||||||    
T  31681833 caccgacacatgtgatttcattcaattatgtcatttt 31681869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 362
Target Start/End: Original strand, 33684891 - 33684923
Alignment:
Q  330 aacacatgtgattacattcaattatgtcatttt 362  Q
    ||||||||||||||||||||||| |||||||||    
T  33684891 aacacatgtgattacattcaattttgtcatttt 33684923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 35871185 - 35871229
Alignment:
Q  327 accaacacatgtgattacattcaattatgtcatttttcgaattat 371  Q
    |||||||||||||||||||||||||||  | ||||||| ||||||    
T  35871185 accaacacatgtgattacattcaattactttatttttcaaattat 35871229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 9460 - 9497
Alignment:
Q  326 caccaacacatgtgattacattcaattatgtcattttt 363  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  9460 caccaacacatgcgatttcattcaattatgtcattttt 9497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 362
Target Start/End: Complemental strand, 22305600 - 22305568
Alignment:
Q  330 aacacatgtgattacattcaattatgtcatttt 362  Q
    ||||||||||||||||||||||||| |||||||    
T  22305600 aacacatgtgattacattcaattatttcatttt 22305568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 371
Target Start/End: Complemental strand, 44605455 - 44605423
Alignment:
Q  339 gattacattcaattatgtcatttttcgaattat 371  Q
    |||||||||||||||||||||||||| ||||||    
T  44605455 gattacattcaattatgtcatttttcaaattat 44605423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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