View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_37 (Length: 411)
Name: NF6973_low_37
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 49 - 400
Target Start/End: Original strand, 37169057 - 37169408
Alignment:
| Q |
49 |
cattcatcacccgcaccaccagaaacctccctcatccataatccaactttctatttccaacacccattctggtctcaaaccaatttctgttatgtcattg |
148 |
Q |
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| T |
37169057 |
cattcatcacccgcaccaccagaaacctccctcatccataatccaactttccatttccaacacccattctgatctcaaaccaatttctgttatgtcattg |
37169156 |
T |
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| Q |
149 |
tatctacagtggtcctgtcaaaacgtgccacttgtgcggccatgcacgaatagacatagttgatcacgcctgggaagcaaacagtggaagaagatgctac |
248 |
Q |
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| T |
37169157 |
tatctacagtgatcctgtcaaaacgtgccacttgtgcggccatgcacgaatagacatagttgatcacgcctgggaagcaaacagtggaagaagatgctac |
37169256 |
T |
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| Q |
249 |
ataatactcgaacctgtggagttattgagcttttctttgcaaacataagtccatgtgttaaataatttcaatgtatggtcatcctccataatcctgcacc |
348 |
Q |
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| T |
37169257 |
ataatactcgaacctgtggagttattgagcttttctttgcaaacataagtccatgtgttaaataatttcaatgtattgtcatcctccataatcctgcacc |
37169356 |
T |
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| Q |
349 |
tcacgcttcatcctatcctttcnnnnnnnccctataattatttgatgtccat |
400 |
Q |
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| T |
37169357 |
tcacgcttcatcctatcctttcattttttccctataattatttgatgtccat |
37169408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 37168953 - 37168985
Alignment:
| Q |
17 |
acatcaagtttaatatagttaaatgatcttaac |
49 |
Q |
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| T |
37168953 |
acatcaagtttaatatagttaaatgatcttaac |
37168985 |
T |
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