View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6973_low_38 (Length: 410)

Name: NF6973_low_38
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6973_low_38
NF6973_low_38
[»] chr8 (4 HSPs)
chr8 (28-401)||(27962621-27962994)
chr8 (28-400)||(27916202-27916574)
chr8 (28-401)||(21407499-21407872)
chr8 (28-401)||(21801991-21802364)
[»] scaffold0001 (1 HSPs)
scaffold0001 (28-401)||(198653-199026)
[»] chr4 (1 HSPs)
chr4 (28-401)||(10988171-10988544)
[»] scaffold0196 (1 HSPs)
scaffold0196 (41-401)||(31489-31849)
[»] chr3 (1 HSPs)
chr3 (28-333)||(51882384-51882689)
[»] chr1 (1 HSPs)
chr1 (206-297)||(21355022-21355113)
[»] chr5 (3 HSPs)
chr5 (221-399)||(25110443-25110621)
chr5 (221-399)||(25169535-25169713)
chr5 (225-366)||(33852278-33852419)


Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 28 - 401
Target Start/End: Original strand, 27962621 - 27962994
Alignment:
Q  28 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcaca 127  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||| ||||| |||||| || ||| ||    
T  27962621 ttgggtcaaggccaacacagatgggtcggttcaaaatttaatggctgcttgtggtggtgtcttccgcgactctagcggaacttttcttggtggattcgca 27962720  T
Q  128 agcaatcttagcatagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttgtggcttg 227  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  27962721 agcaatcttggcatagtttctgtcttccaagcagaaatcgtgggcctcattttgtctacggaatatgcaagttcaaacagctggactcgtttgtggcttg 27962820  T
Q  228 aaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27962821 aaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 27962920  T
Q  328 tattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgtcc 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27962921 tattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgtcc 27962994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 28 - 400
Target Start/End: Original strand, 27916202 - 27916574
Alignment:
Q  28 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcaca 127  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||| ||||| |||||| || ||| ||    
T  27916202 ttgggtcaaggccaacacagatgggtcggttcaaaatttaatggctgcttgtggtggtgtcttccgcgactctagcggaacttttcttggtggattcgca 27916301  T
Q  128 agcaatcttagcatagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttgtggcttg 227  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  27916302 agcaatcttggcatagtttctgtcttccaagcagaaatcgtgggcctcattttgtctacggaatatgcaagttcaaacagctggactcgtttgtggcttg 27916401  T
Q  228 aaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27916402 aaagcgattcttctagtgcggtacaagctttccataaaccatctcttattcaggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 27916501  T
Q  328 tattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgtc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27916502 tattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgtc 27916574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 28 - 401
Target Start/End: Complemental strand, 21407872 - 21407499
Alignment:
Q  28 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcaca 127  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||| ||||| ||| || || ||| ||    
T  21407872 ttgggtcaaggccaacacagatgggtcggttcaaaatttaatggctgcttgtggtggtgtcttccgcgactctcgcggaacttttctgggtggattcgca 21407773  T
Q  128 agcaatcttagcatagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttgtggcttg 227  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21407772 agcaatcttggcatagtttctgtcctccaagcagaaatcttgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 21407673  T
Q  228 aaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 327  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21407672 aaagtgattcttctagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 21407573  T
Q  328 tattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgtcc 401  Q
    ||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  21407572 tattatttgctcccacatcttcagagaagggaatgtttgcgcggatggcctcgccactttgggacatgatgtcc 21407499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 28 - 401
Target Start/End: Complemental strand, 21802364 - 21801991
Alignment:
Q  28 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcaca 127  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||| ||||| ||| || || ||| ||    
T  21802364 ttgggtcaaggccaacacagatgggtcggttcaaaatttaatggctgcttgtggtggtgtcttccgcgactctcgcggaacttttctgggtggattcgca 21802265  T
Q  128 agcaatcttagcatagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttgtggcttg 227  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21802264 agcaatcttggcatagtttctgtcctccaagcagaaatcttgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 21802165  T
Q  228 aaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 327  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21802164 aaagtgattcttctagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 21802065  T
Q  328 tattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgtcc 401  Q
    ||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  21802064 tattatttgctcccacatcttcagagaagggaatgtttgcgcggatggcctcgccactttgggacatgatgtcc 21801991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 28 - 401
Target Start/End: Complemental strand, 199026 - 198653
Alignment:
Q  28 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcaca 127  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||| |||||| |||||||||    
T  199026 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatggctgcttgtggtggtgtcttccgtgactctcgctgaacttttcttggtggtttcaca 198927  T
Q  128 agcaatcttagcatagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttgtggcttg 227  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  198926 agcaatcttggcatagtttttgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 198827  T
Q  228 aaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 327  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  198826 aaagtgattcttctagtgcggtacaagctttccatcaaccatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 198727  T
Q  328 tattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgtcc 401  Q
    ||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  198726 tattatttgctcccacatcttccgagaaggcaatattagcgcggatggcctcgccgctttgggacatgatgtcc 198653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 28 - 401
Target Start/End: Complemental strand, 10988544 - 10988171
Alignment:
Q  28 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcaca 127  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||    
T  10988544 ttgggtcaaggccaacacagatgggtcggttcgaactttaatggctgcttgtggtggtgtcttccgtgactctcgcggaacttttcttggtggtttcaca 10988445  T
Q  128 agcaatcttagcatagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttgtggcttg 227  Q
    || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10988444 agtaatcttggcatagtttctgtcttccaagcagaaatcatgggactcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 10988345  T
Q  228 aaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 327  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||    
T  10988344 aaagtgattcttctagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaaccgttggcataattgtactcacaagggtctctt 10988245  T
Q  328 tattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgtcc 401  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10988244 tattatttgctcccacatcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgtcc 10988171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 41 - 401
Target Start/End: Complemental strand, 31849 - 31489
Alignment:
Q  41 aacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcacaagcaatcttagca 140  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |||||| |||    
T  31849 aacacagatgggtcggttcgaactttaatggctgcttgtggtggtgtcttccgtgactctcgcggaacttttcttggtggtttcacaagtaatcttggca 31750  T
Q  141 tagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttgtggcttgaaagcgattcttc 240  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  31749 tagtttctgtcttccaagcagaaatcatgggactcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttc 31650  T
Q  241 tagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatggtctctttattatttgcttc 340  Q
    ||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  31649 tagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaaccgttggcataattgtactcacaagggtctctttattatttgctcc 31550  T
Q  341 cacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgtcc 401  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31549 cacatcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgtcc 31489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 28 - 333
Target Start/End: Original strand, 51882384 - 51882689
Alignment:
Q  28 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcaca 127  Q
    |||||| ||| | ||||| || ||||||||| ||||||| ||||| ||||| |||||| | || ||||| | | ||| ||||| |||||| || ||| ||    
T  51882384 ttgggtgaagactaacacggacgggtcggttagaaatttgatgtccgcttgcggtggtatttttcgtgattattgcggaacttttcttggtgggttcgca 51882483  T
Q  128 agcaatcttagcatagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttgtggcttg 227  Q
    | |||| || | | ||||||||| ||| | |  ||| |  |||| ||||||||||||||||| |||||   ||||||||  ||| | || ||||||||||    
T  51882484 accaatgttggtagagtttctgttttcgaggttgaagttttgggtctcattttggctatggagtatgcggcttcaaacaattggtcccgcttgtggcttg 51882583  T
Q  228 aaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 327  Q
    |||||||||| ||||||||||  || || || |||||||||||||||||||  ||||||||||| ||||||||||| |||||||||||||||||| | ||    
T  51882584 aaagcgattcctctagtgcggcccaggcatttcataaaccatctcttattcatgttggtcttcggaaccgttggcacaattgtactcacaatggtatgtt 51882683  T
Q  328 tattat 333  Q
    ||||||    
T  51882684 tattat 51882689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 21355022 - 21355113
Alignment:
Q  206 agctggactcgtttgtggcttgaaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccg 297  Q
    |||||| ||| ||| |||||||||||||| |||||||||||||| || |||||||||||||||||||||||||  ||| ||||||| |||||    
T  21355022 agctggtctcatttatggcttgaaagcgactcttctagtgcggttcaggctttccataaaccatctcttattcctgtttgtcttcggaaccg 21355113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 221 - 399
Target Start/End: Complemental strand, 25110621 - 25110443
Alignment:
Q  221 tggcttgaaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatg 320  Q
    ||||||||||| ||||||  ||||||||| ||||| ||||||||||||||||||||||   || ||||||| ||  | |||||||||||  |||| |||     
T  25110621 tggcttgaaagtgattctattagtgcggttcaagccttccataaaccatctcttattcctatttgtcttcggaagaggtggcataattgctctcaaaata 25110522  T
Q  321 gtctctttattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt 399  Q
     | | ||| | |||||||  ||  ||||||| ||||| |||||||| || |||||||| || |||||||||||||||||    
T  25110521 atttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggacatgatgt 25110443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 221 - 399
Target Start/End: Complemental strand, 25169713 - 25169535
Alignment:
Q  221 tggcttgaaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatg 320  Q
    ||||||||||| ||||||  ||||||||| ||||| ||||||||||||||||||||||   || ||||||| ||  | |||||||||||  |||| |||     
T  25169713 tggcttgaaagtgattctattagtgcggttcaagccttccataaaccatctcttattcctatttgtcttcggaagaggtggcataattgctctcaaaata 25169614  T
Q  321 gtctctttattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt 399  Q
     | | ||| | |||||||  ||  ||||||| ||||| |||||||| || |||||||| || |||||||||||||||||    
T  25169613 atttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggacatgatgt 25169535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 366
Target Start/End: Complemental strand, 33852419 - 33852278
Alignment:
Q  225 ttgaaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatggtct 324  Q
    ||||||| ||||||||| |||| || ||||||||||||||||||||||||||||   || ||||||| |||   ||||| || || ||||| |||||  |    
T  33852419 ttgaaagtgattcttcttgtgcagttcaagctttccataaaccatctcttattcctatttgtcttcggaacgagtggcacaactgcactcataatggctt 33852320  T
Q  325 ctttattatttgcttccacgtcttccgagaaggcaatgtttg 366  Q
     ||||| ||||| |  ||| ||||||||||||| ||||||||    
T  33852319 gtttatgatttgttctcacatcttccgagaagggaatgtttg 33852278  T

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