View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_39 (Length: 409)
Name: NF6973_low_39
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 25535312 - 25534934
Alignment:
| Q |
18 |
cttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgagcaagaaagagataaggaggctatggagtgtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25535312 |
cttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgagcaagaaagagataaggaggctatggagtgtt |
25535213 |
T |
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| Q |
118 |
ataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctcttggagattttgttcaggtttggnnnnnnnnccgaggcttggga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
25535212 |
ataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctcttggagattttgctcaggtttggaaaaaaaaccgaggcttggga |
25535113 |
T |
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| Q |
218 |
cttgtttcatggcatgttagacgatcatacacctcccacttttcatgctgtcaactctgacacttttattttgatggtcgatgaatgcttgaagcttggt |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25535112 |
cttgtttcatggcatgttagacaatcatacacctcccacttttcatgctgtcaactctgacacttttattttgatggtcgatgaatgcttgaagcttggt |
25535013 |
T |
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| Q |
318 |
aaaattgatgaagcccttgcaactttgaagaaagttggaaccaagcctgattctaggccttttttcttggatattgatg |
396 |
Q |
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| T |
25535012 |
aagattgatgaagcccttgcaactttgaagaaagttggaaccaagcctgattctaggccttttttcttggatattgatg |
25534934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 25515133 - 25515521
Alignment:
| Q |
18 |
cttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgagcaagaaagagataaggaggctatggagtgtt |
117 |
Q |
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| T |
25515133 |
cttaagaggtggtgtccgaattattacaacggcgttgtgagtgccacttatatgcagtggtgctttgtacaaagaagagagaaggaggctatggagtgtt |
25515232 |
T |
|
| Q |
118 |
ataactccttattgaaccgcaagtgta---tgatgagacctaaaacttgcaatatgctcttggagattttgttcaggtttggnnnnnnnnccgaggcttg |
214 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| | ||||| || || ||| | |||||||| |
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| T |
25515233 |
ataactccttattgaaccgcaagtgtacgatgatgagacctgaaacttgcaatattctcttgacggttttgctctcgtctggaaaaaaaactgaggcttg |
25515332 |
T |
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| Q |
215 |
ggacttgtttcatggcatgttagacgatcatacacctcccacttttcatgctgtcaactctgacacttttattttgatggtcgatgaatgcttgaagctt |
314 |
Q |
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|||||||||||||| |||||||||| |||| ||||||||||||||||||| ||| ||||| ||||||||||| |||||||| |||||||||| |||||| |
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| T |
25515333 |
ggacttgtttcatgacatgttagacaatcacacacctcccacttttcatggtgttgactctaacacttttattgtgatggtcaatgaatgcttcaagctt |
25515432 |
T |
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| Q |
315 |
ggtaaaattgatgaagcccttgcaactttgaagaaag-------ttggaaccaagcctgattctaggccttttttcttggatattgatg |
396 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
25515433 |
ggtaaggttgatgaagcccttgcaactttgaagaaagttggaacttggaaccaagcctgattctaagccttttttcttggatgttgatg |
25515521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 53 - 396
Target Start/End: Complemental strand, 25527245 - 25526902
Alignment:
| Q |
53 |
tgtgagtgtcacttatatacattggttttttgagcaagaaagagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgaga |
152 |
Q |
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|||||||| |||||| || |||||||| || |||||| |||||||||||| || |||||||||||||| || ||||||||||||||||||| ||||||| |
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| T |
25527245 |
tgtgagtgccacttacatgaattggtttcttaagcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgaga |
25527146 |
T |
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| Q |
153 |
cctaaaacttgcaatatgctcttggagattttgttcaggtttggnnnnnnnnccgaggcttgggacttgtttcatggcatgttagacgatcatacacctc |
252 |
Q |
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||| ||||| || || | ||||||||| ||||| ||| || ||| | |||||||||||||||||||||| |||||||||| |||| || ||| |
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| T |
25527145 |
cctgaaactggcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacgcctt |
25527046 |
T |
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| Q |
253 |
ccacttttcatgctgtcaactctgacacttttattttgatggtcgatgaatgcttgaagcttggtaaaattgatgaagcccttgcaactttgaagaaagt |
352 |
Q |
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|||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
25527045 |
ccacttttcatggtgtcgactctgacacttttactttgatggtcgaggaatgcttgaagctcggtaaggttgatgaagcccttgcaactttgaagaaagt |
25526946 |
T |
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| Q |
353 |
tggaaccaagcctgattctaggccttttttcttggatattgatg |
396 |
Q |
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||||||||| |||||||||| |||||||||||||||| |||||| |
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| T |
25526945 |
tggaaccaaacctgattctaagccttttttcttggatgttgatg |
25526902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 25538248 - 25538156
Alignment:
| Q |
75 |
tggttttttgagcaagaaagagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaat |
167 |
Q |
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||||||||| || | | |||||| ||||| || ||||||| |||| ||||||||||||||| ||||| || |||||||||| ||||||||||| |
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| T |
25538248 |
tggttttttaaggagggaagagaaaaggaagccatggagtcttatgactccttattgaaccacaagtttaggatgagacctgaaacttgcaat |
25538156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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