View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6973_low_44 (Length: 384)

Name: NF6973_low_44
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6973_low_44
NF6973_low_44
[»] scaffold0001 (2 HSPs)
scaffold0001 (28-336)||(198718-199026)
scaffold0001 (340-375)||(198653-198688)
[»] chr4 (2 HSPs)
chr4 (28-336)||(10988236-10988544)
chr4 (335-375)||(10988171-10988211)
[»] scaffold0196 (2 HSPs)
scaffold0196 (41-336)||(31554-31849)
scaffold0196 (335-375)||(31489-31529)
[»] chr8 (8 HSPs)
chr8 (28-336)||(21407564-21407872)
chr8 (28-336)||(21802056-21802364)
chr8 (28-336)||(27916202-27916510)
chr8 (28-336)||(27962621-27962929)
chr8 (335-375)||(27962954-27962994)
chr8 (335-374)||(27916535-27916574)
chr8 (335-375)||(21407499-21407539)
chr8 (335-375)||(21801991-21802031)
[»] chr3 (2 HSPs)
chr3 (28-338)||(51882384-51882694)
chr3 (168-277)||(10945527-10945636)
[»] chr1 (1 HSPs)
chr1 (206-315)||(21355022-21355131)
[»] chr5 (3 HSPs)
chr5 (217-279)||(25110563-25110625)
chr5 (217-279)||(25169655-25169717)
chr5 (225-279)||(33852365-33852419)


Alignment Details
Target: scaffold0001 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 28 - 336
Target Start/End: Complemental strand, 199026 - 198718
Alignment:
Q  28 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcaca 127  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||| |||||| |||||||||    
T  199026 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatggctgcttgtggtggtgtcttccgtgactctcgctgaacttttcttggtggtttcaca 198927  T
Q  128 agcaatcttagcatagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 227  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  198926 agcaatcttggcatagtttttgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 198827  T
Q  228 aaagtgattcttctagtgcggtacaagctttccataaaccatctcttattccggttggtcttctcaaccgttggcataattgtacacacaagggtctctt 327  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  198826 aaagtgattcttctagtgcggtacaagctttccatcaaccatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 198727  T
Q  328 tattatttg 336  Q
    |||||||||    
T  198726 tattatttg 198718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 375
Target Start/End: Complemental strand, 198688 - 198653
Alignment:
Q  340 gcgcggatggcctcgccgctttgggacatgatgtcc 375  Q
    ||||||||||||||||||||||||||||||||||||    
T  198688 gcgcggatggcctcgccgctttgggacatgatgtcc 198653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 28 - 336
Target Start/End: Complemental strand, 10988544 - 10988236
Alignment:
Q  28 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcaca 127  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||    
T  10988544 ttgggtcaaggccaacacagatgggtcggttcgaactttaatggctgcttgtggtggtgtcttccgtgactctcgcggaacttttcttggtggtttcaca 10988445  T
Q  128 agcaatcttagcatagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 227  Q
    || |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10988444 agtaatcttggcatagtttctgtcttccaagcagaaatcatgggactcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 10988345  T
Q  228 aaagtgattcttctagtgcggtacaagctttccataaaccatctcttattccggttggtcttctcaaccgttggcataattgtacacacaagggtctctt 327  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  10988344 aaagtgattcttctagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaaccgttggcataattgtactcacaagggtctctt 10988245  T
Q  328 tattatttg 336  Q
    |||||||||    
T  10988244 tattatttg 10988236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 10988211 - 10988171
Alignment:
Q  335 tgtttgcgcggatggcctcgccgctttgggacatgatgtcc 375  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10988211 tgtttgcgcggatggcctcgccgctttgggacatgatgtcc 10988171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 41 - 336
Target Start/End: Complemental strand, 31849 - 31554
Alignment:
Q  41 aacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcacaagcaatcttagca 140  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |||||| |||    
T  31849 aacacagatgggtcggttcgaactttaatggctgcttgtggtggtgtcttccgtgactctcgcggaacttttcttggtggtttcacaagtaatcttggca 31750  T
Q  141 tagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttc 240  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31749 tagtttctgtcttccaagcagaaatcatgggactcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttc 31650  T
Q  241 tagtgcggtacaagctttccataaaccatctcttattccggttggtcttctcaaccgttggcataattgtacacacaagggtctctttattatttg 336  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  31649 tagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaaccgttggcataattgtactcacaagggtctctttattatttg 31554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 31529 - 31489
Alignment:
Q  335 tgtttgcgcggatggcctcgccgctttgggacatgatgtcc 375  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31529 tgtttgcgcggatggcctcgccgctttgggacatgatgtcc 31489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 28 - 336
Target Start/End: Complemental strand, 21407872 - 21407564
Alignment:
Q  28 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcaca 127  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||| ||||| ||| || || ||| ||    
T  21407872 ttgggtcaaggccaacacagatgggtcggttcaaaatttaatggctgcttgtggtggtgtcttccgcgactctcgcggaacttttctgggtggattcgca 21407773  T
Q  128 agcaatcttagcatagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 227  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21407772 agcaatcttggcatagtttctgtcctccaagcagaaatcttgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 21407673  T
Q  228 aaagtgattcttctagtgcggtacaagctttccataaaccatctcttattccggttggtcttctcaaccgttggcataattgtacacacaagggtctctt 327  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  21407672 aaagtgattcttctagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 21407573  T
Q  328 tattatttg 336  Q
    |||||||||    
T  21407572 tattatttg 21407564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 28 - 336
Target Start/End: Complemental strand, 21802364 - 21802056
Alignment:
Q  28 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcaca 127  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||| ||||| ||| || || ||| ||    
T  21802364 ttgggtcaaggccaacacagatgggtcggttcaaaatttaatggctgcttgtggtggtgtcttccgcgactctcgcggaacttttctgggtggattcgca 21802265  T
Q  128 agcaatcttagcatagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 227  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21802264 agcaatcttggcatagtttctgtcctccaagcagaaatcttgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 21802165  T
Q  228 aaagtgattcttctagtgcggtacaagctttccataaaccatctcttattccggttggtcttctcaaccgttggcataattgtacacacaagggtctctt 327  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  21802164 aaagtgattcttctagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 21802065  T
Q  328 tattatttg 336  Q
    |||||||||    
T  21802064 tattatttg 21802056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 28 - 336
Target Start/End: Original strand, 27916202 - 27916510
Alignment:
Q  28 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcaca 127  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||| ||||| |||||| || ||| ||    
T  27916202 ttgggtcaaggccaacacagatgggtcggttcaaaatttaatggctgcttgtggtggtgtcttccgcgactctagcggaacttttcttggtggattcgca 27916301  T
Q  128 agcaatcttagcatagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 227  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||    
T  27916302 agcaatcttggcatagtttctgtcttccaagcagaaatcgtgggcctcattttgtctacggaatatgcaagttcaaacagctggactcgtttgtggcttg 27916401  T
Q  228 aaagtgattcttctagtgcggtacaagctttccataaaccatctcttattccggttggtcttctcaaccgttggcataattgtacacacaagggtctctt 327  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  27916402 aaagcgattcttctagtgcggtacaagctttccataaaccatctcttattcaggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 27916501  T
Q  328 tattatttg 336  Q
    |||||||||    
T  27916502 tattatttg 27916510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 28 - 336
Target Start/End: Original strand, 27962621 - 27962929
Alignment:
Q  28 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcaca 127  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||| ||||| |||||| || ||| ||    
T  27962621 ttgggtcaaggccaacacagatgggtcggttcaaaatttaatggctgcttgtggtggtgtcttccgcgactctagcggaacttttcttggtggattcgca 27962720  T
Q  128 agcaatcttagcatagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 227  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||    
T  27962721 agcaatcttggcatagtttctgtcttccaagcagaaatcgtgggcctcattttgtctacggaatatgcaagttcaaacagctggactcgtttgtggcttg 27962820  T
Q  228 aaagtgattcttctagtgcggtacaagctttccataaaccatctcttattccggttggtcttctcaaccgttggcataattgtacacacaagggtctctt 327  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  27962821 aaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatggtctctt 27962920  T
Q  328 tattatttg 336  Q
    |||||||||    
T  27962921 tattatttg 27962929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 27962954 - 27962994
Alignment:
Q  335 tgtttgcgcggatggcctcgccgctttgggacatgatgtcc 375  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27962954 tgtttgcgcggatggcctcgccgctttgggacatgatgtcc 27962994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 335 - 374
Target Start/End: Original strand, 27916535 - 27916574
Alignment:
Q  335 tgtttgcgcggatggcctcgccgctttgggacatgatgtc 374  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27916535 tgtttgcgcggatggcctcgccgctttgggacatgatgtc 27916574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 21407539 - 21407499
Alignment:
Q  335 tgtttgcgcggatggcctcgccgctttgggacatgatgtcc 375  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  21407539 tgtttgcgcggatggcctcgccactttgggacatgatgtcc 21407499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 21802031 - 21801991
Alignment:
Q  335 tgtttgcgcggatggcctcgccgctttgggacatgatgtcc 375  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  21802031 tgtttgcgcggatggcctcgccactttgggacatgatgtcc 21801991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 338
Target Start/End: Original strand, 51882384 - 51882694
Alignment:
Q  28 ttgggtcaaggccaacacagatgggtcggttcgaaatttaatgtctgcttgtggtggtgtcttccgtgactctcgcgaaacttctcttggaggtttcaca 127  Q
    |||||| ||| | ||||| || ||||||||| ||||||| ||||| ||||| |||||| | || ||||| | | ||| ||||| |||||| || ||| ||    
T  51882384 ttgggtgaagactaacacggacgggtcggttagaaatttgatgtccgcttgcggtggtatttttcgtgattattgcggaacttttcttggtgggttcgca 51882483  T
Q  128 agcaatcttagcatagtttctgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttg 227  Q
    | |||| || | | ||||||||| ||| | |  ||| |  |||| ||||||||||||||||| |||||   ||||||||  ||| | || || |||||||    
T  51882484 accaatgttggtagagtttctgttttcgaggttgaagttttgggtctcattttggctatggagtatgcggcttcaaacaattggtcccgcttgtggcttg 51882583  T
Q  228 aaagtgattcttctagtgcggtacaagctttccataaaccatctcttattccggttggtcttctcaaccgttggcataattgtacacacaagggtctctt 327  Q
    |||| ||||| ||||||||||  || || || |||||||||||||||||||  ||||||||||  ||||||||||| |||||||| ||||| ||| | ||    
T  51882584 aaagcgattcctctagtgcggcccaggcatttcataaaccatctcttattcatgttggtcttcggaaccgttggcacaattgtactcacaatggtatgtt 51882683  T
Q  328 tattatttgtt 338  Q
    |||||| ||||    
T  51882684 tattatatgtt 51882694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 10945527 - 10945636
Alignment:
Q  168 tgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttctagtgcggtacaagctttccataaacc 267  Q
    |||| ||||||||||||||||| ||||||  | | || |  ||||||||||||| |||||||||| | ||||| |||||||| || |||||| | || ||    
T  10945527 tgggtctcattttggctatggagtatgcagctgcgaataattggactcgtttatagcttgaaagtaactcttccagtgcggttcatgctttcaacaatcc 10945626  T
Q  268 atctcttatt 277  Q
     |||||||||    
T  10945627 ctctcttatt 10945636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 206 - 315
Target Start/End: Original strand, 21355022 - 21355131
Alignment:
Q  206 agctggactcgtttatggcttgaaagtgattcttctagtgcggtacaagctttccataaaccatctcttattccggttggtcttctcaaccgttggcata 305  Q
    |||||| ||| ||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||| ||| ||||||  ||||| || || |    
T  21355022 agctggtctcatttatggcttgaaagcgactcttctagtgcggttcaggctttccataaaccatctcttattcctgtttgtcttcggaaccgatgacaca 21355121  T
Q  306 attgtacaca 315  Q
    | ||||||||    
T  21355122 actgtacaca 21355131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 25110625 - 25110563
Alignment:
Q  217 tttatggcttgaaagtgattcttctagtgcggtacaagctttccataaaccatctcttattcc 279  Q
    ||||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||||    
T  25110625 tttatggcttgaaagtgattctattagtgcggttcaagccttccataaaccatctcttattcc 25110563  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 25169717 - 25169655
Alignment:
Q  217 tttatggcttgaaagtgattcttctagtgcggtacaagctttccataaaccatctcttattcc 279  Q
    ||||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||||    
T  25169717 tttatggcttgaaagtgattctattagtgcggttcaagccttccataaaccatctcttattcc 25169655  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 33852419 - 33852365
Alignment:
Q  225 ttgaaagtgattcttctagtgcggtacaagctttccataaaccatctcttattcc 279  Q
    ||||||||||||||||| |||| || |||||||||||||||||||||||||||||    
T  33852419 ttgaaagtgattcttcttgtgcagttcaagctttccataaaccatctcttattcc 33852365  T

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